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The map label for this gene is ybeC [H]

Identifier: 52842597

GI number: 52842597

Start: 2696102

End: 2697832

Strand: Reverse

Name: ybeC [H]

Synonym: lpg2388

Alternate gene names: 52842597

Gene position: 2697832-2696102 (Counterclockwise)

Preceding gene: 52842599

Following gene: 52842596

Centisome position: 79.4

GC content: 40.73

Gene sequence:

>1731_bases
TTGACTCTTATAGGGTTGGTAGTCATGATATTTCTGTTTACAATGCAAAAATATAATGATTTCGCTCTGCTGACTGGTGA
ATTGTTTGCCTGCATCAAAATCATAAGGACATGTGAAAATCAGATGAATAAAAATTTAAGTGCTTTGAGTTTACTTTGGA
TTTCAATTACCAGCATGGTAGGCTCAGGCTGGTTATTTGGTTCTTTATATTCTGCTCATTTTGCTGGTCCTGCTGCCATT
ATCGCTTGGCCACTGGCAGGTTTTTTACTTCTGTTTGTTGCTTTATCTTACGCTGAATTAGGTACGATGTTTCCACAGTC
CGACAGCCTGGCTTGCTTGCCTTTATATACCCATGGACGTTTGACTGGCATTATCATGAATGTCATGACTTGGTTTTCCC
TGGCCATTTTGCCAGTGATTGAAACGCAAGGTGTCATTCAATATGCTAGTAATTACATTCCAGATCTGGTATCTCATGAC
GCTTTGCACTATCGAAATACGCCAACAGGTTATATGTTGTCGCTGCTTGTATTAATGAGTTTTATTTTGTTTAATTATTT
TGGTATTGGTTTGTTTGCCCGCATTAATGCCGCATTTACTATCTGGAAGATAATAATCCCTATTCTTACTATCGCAAGCT
TGGTAACCATGAGTTATCACCCGGGTAATTTTTTTCAGCACGGTGGTTTTATGCCTTATGGCTGGCAGGGCGTTATGGCA
GCAATGTCAAGCGGAGGTGTGCTTTTTTCACTTTTAGGGTTTCGACAAGTGGTTATCATGATGGGTGAATTGGAGAAACC
AGGACAATACATACCTCTGATTTTGGGTGGTTCATTAGTGTTCGTGACACTGCTTTACACTGGTTTGCAATGGTCCTTTA
TTGGGAGTGTTAGCGAACAAGCGCTGGAAAAAGGGTGGGTGAATTTGTCTTTTACTGGTGATGCAGGACCATTTGCTGCT
CTCGCTGCACTGGCCGGTATGCTTTGGTTGAGTATTTTATTGTACGCCGATGCTTTTATATCACCTTATTCCACTGGTCT
TGTTTATTCAACCACAGCAGCTCACATGCTAAGTAGTATGGGCTCAGTTGTTCCTACACCTGTAATTCTTACAAAACAAA
ACAGGTATCAAGTTCCTTGGGTTAGTTTAGGCGTAAATTTCTTACTCGCTGCCACCATGTCGCTCGTGTTGCACGGATGG
CAAGAAATGTCAGCTTTTCTTGTGGCAATATTAATGATTAGCTATTCCATAGGGCCTGTAGCACTGGTTTGCTTACGTCA
GCAATTACCGCACTATAAGCGTCCTTTTCGTTTGCAGGGGAGTAACCTTATTGGCTTTCTCGGATTTTATGTTTGTACAG
TCGGTGTTTATTGGGCAGGTTTCCATAGCGTACGAAAGTTATTGGTGATCACTATTCTGGGAGTAGTTTGTTCTTTCCTC
TATTGTCTTATGAAAAATACACATCGGGAGATTGATAGCAAACAAGCACTGTGGTTTATATTCTATCTTTTTGGACTTGG
TATTTTCTCATTTCTTGGTAATTATGGTGGTAAGCATATCCTTCCCCAGTATTGGGATTTGTTGTATTTATTAGTTTTCA
GCTTGCTTGTATTTGGTTTTGCCCTATTGTCCAGAAAGCCCAGTGCCCACACTCAAAACATGGTTGCCCAAAATACACGC
ACTACTATAACTGCTCCTGCTTTCTCAATTGAGCGATATGACATTGCTTGA

Upstream 100 bases:

>100_bases
TGAAAAATGCTGAATCCATAGCAAAGAAAATCACTGCTGCAAGTTCTTGTTTTTCATTTTTCCTGATGCAGGAAGGTATT
TATAACATACCTGGTTAAAC

Downstream 100 bases:

>100_bases
TTAGAATCCTTAATGATTAATATTATTCAATGTTGATCTTGACAAGATCATTTTGGATCACAATAATGCGATTGGTTTTT
TAAAGTCACTTTGCTGCAAG

Product: amino acid permease

Products: D-glycine [Cytoplasm]; D-alanine [Cytoplasm]; Proton [Cytoplasm]; D-serine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 575

Protein sequence:

>576_residues
MTLIGLVVMIFLFTMQKYNDFALLTGELFACIKIIRTCENQMNKNLSALSLLWISITSMVGSGWLFGSLYSAHFAGPAAI
IAWPLAGFLLLFVALSYAELGTMFPQSDSLACLPLYTHGRLTGIIMNVMTWFSLAILPVIETQGVIQYASNYIPDLVSHD
ALHYRNTPTGYMLSLLVLMSFILFNYFGIGLFARINAAFTIWKIIIPILTIASLVTMSYHPGNFFQHGGFMPYGWQGVMA
AMSSGGVLFSLLGFRQVVIMMGELEKPGQYIPLILGGSLVFVTLLYTGLQWSFIGSVSEQALEKGWVNLSFTGDAGPFAA
LAALAGMLWLSILLYADAFISPYSTGLVYSTTAAHMLSSMGSVVPTPVILTKQNRYQVPWVSLGVNFLLAATMSLVLHGW
QEMSAFLVAILMISYSIGPVALVCLRQQLPHYKRPFRLQGSNLIGFLGFYVCTVGVYWAGFHSVRKLLVITILGVVCSFL
YCLMKNTHREIDSKQALWFIFYLFGLGIFSFLGNYGGKHILPQYWDLLYLLVFSLLVFGFALLSRKPSAHTQNMVAQNTR
TTITAPAFSIERYDIA

Sequences:

>Translated_576_residues
MTLIGLVVMIFLFTMQKYNDFALLTGELFACIKIIRTCENQMNKNLSALSLLWISITSMVGSGWLFGSLYSAHFAGPAAI
IAWPLAGFLLLFVALSYAELGTMFPQSDSLACLPLYTHGRLTGIIMNVMTWFSLAILPVIETQGVIQYASNYIPDLVSHD
ALHYRNTPTGYMLSLLVLMSFILFNYFGIGLFARINAAFTIWKIIIPILTIASLVTMSYHPGNFFQHGGFMPYGWQGVMA
AMSSGGVLFSLLGFRQVVIMMGELEKPGQYIPLILGGSLVFVTLLYTGLQWSFIGSVSEQALEKGWVNLSFTGDAGPFAA
LAALAGMLWLSILLYADAFISPYSTGLVYSTTAAHMLSSMGSVVPTPVILTKQNRYQVPWVSLGVNFLLAATMSLVLHGW
QEMSAFLVAILMISYSIGPVALVCLRQQLPHYKRPFRLQGSNLIGFLGFYVCTVGVYWAGFHSVRKLLVITILGVVCSFL
YCLMKNTHREIDSKQALWFIFYLFGLGIFSFLGNYGGKHILPQYWDLLYLLVFSLLVFGFALLSRKPSAHTQNMVAQNTR
TTITAPAFSIERYDIA
>Mature_575_residues
TLIGLVVMIFLFTMQKYNDFALLTGELFACIKIIRTCENQMNKNLSALSLLWISITSMVGSGWLFGSLYSAHFAGPAAII
AWPLAGFLLLFVALSYAELGTMFPQSDSLACLPLYTHGRLTGIIMNVMTWFSLAILPVIETQGVIQYASNYIPDLVSHDA
LHYRNTPTGYMLSLLVLMSFILFNYFGIGLFARINAAFTIWKIIIPILTIASLVTMSYHPGNFFQHGGFMPYGWQGVMAA
MSSGGVLFSLLGFRQVVIMMGELEKPGQYIPLILGGSLVFVTLLYTGLQWSFIGSVSEQALEKGWVNLSFTGDAGPFAAL
AALAGMLWLSILLYADAFISPYSTGLVYSTTAAHMLSSMGSVVPTPVILTKQNRYQVPWVSLGVNFLLAATMSLVLHGWQ
EMSAFLVAILMISYSIGPVALVCLRQQLPHYKRPFRLQGSNLIGFLGFYVCTVGVYWAGFHSVRKLLVITILGVVCSFLY
CLMKNTHREIDSKQALWFIFYLFGLGIFSFLGNYGGKHILPQYWDLLYLLVFSLLVFGFALLSRKPSAHTQNMVAQNTRT
TITAPAFSIERYDIA

Specific function: Uptake of an yet unknown amino-acid with the concomitant import of a proton [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. AGT (TC 2.A.3.11) family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17533459, Length=272, Percent_Identity=27.5735294117647, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 63819; Mature: 63687

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCCHHHHHHHCCCCCEEECCCEECCCCCCC
>Mature Secondary Structure 
TLIGLVVMIFLFTMQKYNDFALLTGELFACIKIIRTCENQMNKNLSALSLLWISITSMV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH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HHHCCCCCCHHHHHHHCCCCCEEECCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-glycine [Periplasm]; D-alanine [Periplasm]; Proton [Periplasm]; D-serine [Periplasm] [C]

Specific reaction: Proton [Periplasm] + D-glycine [Periplasm] = Proton [Cytoplasm] + D-glycine [Cytoplasm] Proton [Periplasm] + D-alanine [Periplasm] = Proton [Cytoplasm] + D-alanine [Cytoplasm] Proton [Periplasm] + D-serine [Periplasm] = Proton [Cytoplasm] + D-serine [Cyto

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377; 12730183 [H]