Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 52842405

GI number: 52842405

Start: 2475025

End: 2475591

Strand: Direct

Name: (hspc4-1 [H]

Synonym: lpg2192

Alternate gene names: 52842405

Gene position: 2475025-2475591 (Clockwise)

Preceding gene: 52842404

Following gene: 52842406

Centisome position: 72.84

GC content: 38.45

Gene sequence:

>567_bases
ATGGAGGTTACGACTATGGACATTAAAAAACTTGCTCCCTGGAATTGGTTTAAAGAGGAAGAAGCTCAAAATAAGAGCGT
ACCGCTTAGTACCACTGGACAAAGCTGCATTTCTCCTCTGAGCCAACTGCATCAAGAAATAGATAGAATATTTGATAATG
TCTTAAGAAGCGTTGGGATTTCTAATCTGGATATAGAAAAAACACCCTCTAACTCAGCCCAAAATCTGTTGCTTAAACCC
TGTATCGATATTGCAGCAACTGATAAGGAATATACCATCACAGTAGAAGTGCCTGGCGTGGAAGAAGATCATATTAAGTT
GGAATTAAGCGATAACACATTGATCATCAAGGGCGAAAAAAAACATGAGTCAGAAAAAAAAGACAAAGACATCTATAGAA
TCGAACGCGCTTATGGCTCATTTCAACGCGTGTTATCACTTCCAGAAGACGCTAATCAAGAAGACATCAAAGCTCAGATA
AAAAATGGGGTTCTCACCATTACAATGCCACGTAAGGAGGTATCCAAACCCAAAGGTAAATTAATAGACATTAAAAAAGC
AAGCTGA

Upstream 100 bases:

>100_bases
TTTAGATAGAATAGCCAGATTTCGCCTGGCAATGATTAATTTGATGTTAACCAGATAAGTCTAATAATAGCAATAACTCA
ATTGACTTAACCCAGATTTA

Downstream 100 bases:

>100_bases
TTTATTGCCAGAAATCTATGAGCAATGTGCCCATATAAGTATCCTCTTTAATTCAATAGAAAGAGGGGGCCAAGGGAAAA
GTTAGAGTTGGATAAAAATC

Product: small HspC2 heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MEVTTMDIKKLAPWNWFKEEEAQNKSVPLSTTGQSCISPLSQLHQEIDRIFDNVLRSVGISNLDIEKTPSNSAQNLLLKP
CIDIAATDKEYTITVEVPGVEEDHIKLELSDNTLIIKGEKKHESEKKDKDIYRIERAYGSFQRVLSLPEDANQEDIKAQI
KNGVLTITMPRKEVSKPKGKLIDIKKAS

Sequences:

>Translated_188_residues
MEVTTMDIKKLAPWNWFKEEEAQNKSVPLSTTGQSCISPLSQLHQEIDRIFDNVLRSVGISNLDIEKTPSNSAQNLLLKP
CIDIAATDKEYTITVEVPGVEEDHIKLELSDNTLIIKGEKKHESEKKDKDIYRIERAYGSFQRVLSLPEDANQEDIKAQI
KNGVLTITMPRKEVSKPKGKLIDIKKAS
>Mature_188_residues
MEVTTMDIKKLAPWNWFKEEEAQNKSVPLSTTGQSCISPLSQLHQEIDRIFDNVLRSVGISNLDIEKTPSNSAQNLLLKP
CIDIAATDKEYTITVEVPGVEEDHIKLELSDNTLIIKGEKKHESEKKDKDIYRIERAYGSFQRVLSLPEDANQEDIKAQI
KNGVLTITMPRKEVSKPKGKLIDIKKAS

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 21246; Mature: 21246

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVTTMDIKKLAPWNWFKEEEAQNKSVPLSTTGQSCISPLSQLHQEIDRIFDNVLRSVGI
CCCCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNLDIEKTPSNSAQNLLLKPCIDIAATDKEYTITVEVPGVEEDHIKLELSDNTLIIKGEK
CCCCCCCCCCCCHHHHHHHHHHHHEECCCEEEEEEEECCCCCCEEEEEECCCEEEEECCH
KHESEKKDKDIYRIERAYGSFQRVLSLPEDANQEDIKAQIKNGVLTITMPRKEVSKPKGK
HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEECHHHHCCCCCC
LIDIKKAS
EEEEEECC
>Mature Secondary Structure
MEVTTMDIKKLAPWNWFKEEEAQNKSVPLSTTGQSCISPLSQLHQEIDRIFDNVLRSVGI
CCCCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
SNLDIEKTPSNSAQNLLLKPCIDIAATDKEYTITVEVPGVEEDHIKLELSDNTLIIKGEK
CCCCCCCCCCCCHHHHHHHHHHHHEECCCEEEEEEEECCCCCCEEEEEECCCEEEEECCH
KHESEKKDKDIYRIERAYGSFQRVLSLPEDANQEDIKAQIKNGVLTITMPRKEVSKPKGK
HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEEEECHHHHCCCCCC
LIDIKKAS
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA