Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 52842354

GI number: 52842354

Start: 2387854

End: 2388234

Strand: Reverse

Name: ytfH [C]

Synonym: lpg2140

Alternate gene names: 52842354

Gene position: 2388234-2387854 (Counterclockwise)

Preceding gene: 52842357

Following gene: 52842353

Centisome position: 70.29

GC content: 35.7

Gene sequence:

>381_bases
ATGGTACAAATTATTGAAATGGATGAAAAAAAATTAATACAAAAAAAAGCTCCCATTAAGACCGCATCAATGGTAGAGGC
TATCTATGGTTGTAAGTGGTCCTTGACTATCTATTCTCTTTTACGAAATGGAATCAATCGACCAGGGGAAATGGTACGAA
GCGTTGAAGGACTATCAACAAAAGTTTTAAACCAATGCCTTCGGAAGAATATTGAATTTGGGATTCTCGGCAGAAATACC
TTTCATGAGCTACCTCCCAGAGTTGAGTATTTTGTGACTCCTTTTGGAGAAAAGTTTTTAAAAATTCTGGATCAAATAGA
AGAGTTAAACGAGCAAATCAGGGATTATCAACAACCCAAGTTCCACAATGATGATAGTTAA

Upstream 100 bases:

>100_bases
GAACATAGATTCTCCTGATTCATTAAAATACTGTCCAATCCAGTATGAAAGAACTACAATATTAAAAAAAGTAAGCACTT
TTCAGTTCACTAAGTACTTT

Downstream 100 bases:

>100_bases
GATTTTTTGTAAAAGACGTATTACCAATAGACTGCGGGTGAATTATGGCTCACAATACTCAGCGTCGCAATGAGCTGTTG
TTAATCAGTATCATTATGAA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: HxlR Family Transcriptional Regulator; Transcriptional Regulator HxlR Family Protein; MarR Family Transporter Transcriptional Regulator; Transcriptional Regulator HxlR Family

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MVQIIEMDEKKLIQKKAPIKTASMVEAIYGCKWSLTIYSLLRNGINRPGEMVRSVEGLSTKVLNQCLRKNIEFGILGRNT
FHELPPRVEYFVTPFGEKFLKILDQIEELNEQIRDYQQPKFHNDDS

Sequences:

>Translated_126_residues
MVQIIEMDEKKLIQKKAPIKTASMVEAIYGCKWSLTIYSLLRNGINRPGEMVRSVEGLSTKVLNQCLRKNIEFGILGRNT
FHELPPRVEYFVTPFGEKFLKILDQIEELNEQIRDYQQPKFHNDDS
>Mature_126_residues
MVQIIEMDEKKLIQKKAPIKTASMVEAIYGCKWSLTIYSLLRNGINRPGEMVRSVEGLSTKVLNQCLRKNIEFGILGRNT
FHELPPRVEYFVTPFGEKFLKILDQIEELNEQIRDYQQPKFHNDDS

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14702; Mature: 14702

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQIIEMDEKKLIQKKAPIKTASMVEAIYGCKWSLTIYSLLRNGINRPGEMVRSVEGLST
CCEEECCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KVLNQCLRKNIEFGILGRNTFHELPPRVEYFVTPFGEKFLKILDQIEELNEQIRDYQQPK
HHHHHHHHCCCCEEEECCCHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
FHNDDS
CCCCCC
>Mature Secondary Structure
MVQIIEMDEKKLIQKKAPIKTASMVEAIYGCKWSLTIYSLLRNGINRPGEMVRSVEGLST
CCEEECCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KVLNQCLRKNIEFGILGRNTFHELPPRVEYFVTPFGEKFLKILDQIEELNEQIRDYQQPK
HHHHHHHHCCCCEEEECCCHHHHCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHCCCC
FHNDDS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA