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The map label for this gene is 52842088

Identifier: 52842088

GI number: 52842088

Start: 2087055

End: 2088281

Strand: Direct

Name: 52842088

Synonym: lpg1867

Alternate gene names: NA

Gene position: 2087055-2088281 (Clockwise)

Preceding gene: 52842081

Following gene: 52842089

Centisome position: 61.42

GC content: 40.75

Gene sequence:

>1227_bases
ATGATCATGAAAACAAAACTATTACCCTTGTTTGATAATCTCAATCACATCCATAAAAACCATGAAAATGTAATATTGCC
TGATGCCCGATTTCACAATGATTTCACTTATTGCTTAAGCTTTTTAAAAAGCTACATAGGGAGCGAAGGTACTTTCAACA
GTTACAGAAGAGAAACAGAACGTTTGTTACAGTGGTCATGGCTTGTCAAAAACTCTACTATTGATTCTTTAAGGCGCGAC
GATATTGAACAATACATCCATTTCTGTCAAAACCCGCCTAAAACATGGATTAGTCTTAAAAAAGTTCCACGATTTATAGA
AAAAAATGGTAACCGGATACCTAATGAAGAGTGGCGACCTTTTGTAGTGACACTAAGTAAGGTTTCCAGGAAAAATGGGC
ATCTTGCATCAATAGATCAATTCAAGTTATCTCAGGGAGCCGTGCAAGAAATATTCGCCATCTTAAGTACTCTATTCAAC
TTTCTAATTGCTGAAGAATATCTGATATCCAATCCAGTTGCCCTTATTAGGCAAAAAAGCAAATTTATTCGCAAAAGACA
GCATAACGCGCCTGTTAGACGATTAAGTCTGGTTCAATGGGAGGCTGTCCTGAGAGCAGCTGAAAGTTTGGCTGAAGATT
CCCCTGAAAAACATGAACGCACTCGTTTTATTTTAAGTCTGTTATTTGGCATGTATCTTCGTATATCAGAACTTGCTGCC
AGTGAGAGATGGGTACCCAGTATGAATGATTTTGCCAAGGACAGTAATGGCCACTGGTGGTTTACTACCGTAGGGAAAGG
AAATAAGGAACGACAAATTGCGGTAAGCGACGCTATGCTGGAAAGTCTTACCCGTTGGCGATTATTTCTTGGACTTACCC
CTCTTCCATCACCAGCTGATAATTCGCCTTTACTACCTAAGCTGCGTGGTCATGGTCCAATGAGTGATACAGCTCCTATA
AGGCGAATTGTTCAGCATTGTTTTGACTTGGCAGAAGAACAACTGCGACTTAATGGTTTATCAGAGGAAGCGGATAATCT
ATCCGCTGCCACGGTGCATTGGCTGCGGCATACTGGTATATCAGAAGATGTAAAAATCAGGCCCAGAGAGCATGTGCGAG
ATGATGCCGGGCACAGTTCAAGTGCTACAACGGACAGGTATATTGATATAGAAAAGCAAGCACGTTATCAATCGGCACGA
AAGAAAATAATTCAGCCCAGCGAATAA

Upstream 100 bases:

>100_bases
ATTATCAACAATAACTCGTGTACTCTATAACTATGCACTTTCACCCTCATGACTTAAATCAGCAATTAGGTTAGGATAAT
GAATTATCAGCAGATAAGTT

Downstream 100 bases:

>100_bases
TTTATTTTTAAAGAAAATCTGGTTTTAAACTTATGCAAATATCCAGCTCGCTTACATGATCAATAGGAAGCTTAAGCTAA
TTTATGATAAAATGACTGAT

Product: site specific recombinase, phage integrase

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase; Integrase/Recombinase Protein; Site-Specific Recombinase Phage Integrase Family; Integrase/Recombinase; Phage Integrase Family Site Specific Recombinase; Site Specific Recombinase Phage Integrase Family; Integrase; Integrase / Recombinase Protein; Site-Specific Recombinase Phage Integrase Family Protein; Site-Specific Recombinase; Site-Specific Tyrosine Integrase/Recombinase; Site-Specific Recombinase XerC; Phage Integrase Family; Tyrosine-Based Site-Specific Recombinase; Phage IntegrasePhage Integrase N-Terminal SAM-Like

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MIMKTKLLPLFDNLNHIHKNHENVILPDARFHNDFTYCLSFLKSYIGSEGTFNSYRRETERLLQWSWLVKNSTIDSLRRD
DIEQYIHFCQNPPKTWISLKKVPRFIEKNGNRIPNEEWRPFVVTLSKVSRKNGHLASIDQFKLSQGAVQEIFAILSTLFN
FLIAEEYLISNPVALIRQKSKFIRKRQHNAPVRRLSLVQWEAVLRAAESLAEDSPEKHERTRFILSLLFGMYLRISELAA
SERWVPSMNDFAKDSNGHWWFTTVGKGNKERQIAVSDAMLESLTRWRLFLGLTPLPSPADNSPLLPKLRGHGPMSDTAPI
RRIVQHCFDLAEEQLRLNGLSEEADNLSAATVHWLRHTGISEDVKIRPREHVRDDAGHSSSATTDRYIDIEKQARYQSAR
KKIIQPSE

Sequences:

>Translated_408_residues
MIMKTKLLPLFDNLNHIHKNHENVILPDARFHNDFTYCLSFLKSYIGSEGTFNSYRRETERLLQWSWLVKNSTIDSLRRD
DIEQYIHFCQNPPKTWISLKKVPRFIEKNGNRIPNEEWRPFVVTLSKVSRKNGHLASIDQFKLSQGAVQEIFAILSTLFN
FLIAEEYLISNPVALIRQKSKFIRKRQHNAPVRRLSLVQWEAVLRAAESLAEDSPEKHERTRFILSLLFGMYLRISELAA
SERWVPSMNDFAKDSNGHWWFTTVGKGNKERQIAVSDAMLESLTRWRLFLGLTPLPSPADNSPLLPKLRGHGPMSDTAPI
RRIVQHCFDLAEEQLRLNGLSEEADNLSAATVHWLRHTGISEDVKIRPREHVRDDAGHSSSATTDRYIDIEKQARYQSAR
KKIIQPSE
>Mature_408_residues
MIMKTKLLPLFDNLNHIHKNHENVILPDARFHNDFTYCLSFLKSYIGSEGTFNSYRRETERLLQWSWLVKNSTIDSLRRD
DIEQYIHFCQNPPKTWISLKKVPRFIEKNGNRIPNEEWRPFVVTLSKVSRKNGHLASIDQFKLSQGAVQEIFAILSTLFN
FLIAEEYLISNPVALIRQKSKFIRKRQHNAPVRRLSLVQWEAVLRAAESLAEDSPEKHERTRFILSLLFGMYLRISELAA
SERWVPSMNDFAKDSNGHWWFTTVGKGNKERQIAVSDAMLESLTRWRLFLGLTPLPSPADNSPLLPKLRGHGPMSDTAPI
RRIVQHCFDLAEEQLRLNGLSEEADNLSAATVHWLRHTGISEDVKIRPREHVRDDAGHSSSATTDRYIDIEKQARYQSAR
KKIIQPSE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47291; Mature: 47291

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMKTKLLPLFDNLNHIHKNHENVILPDARFHNDFTYCLSFLKSYIGSEGTFNSYRRETE
CCCCCCCHHHHHHHHHHHCCCCCEECCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
RLLQWSWLVKNSTIDSLRRDDIEQYIHFCQNPPKTWISLKKVPRFIEKNGNRIPNEEWRP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
FVVTLSKVSRKNGHLASIDQFKLSQGAVQEIFAILSTLFNFLIAEEYLISNPVALIRQKS
HEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KFIRKRQHNAPVRRLSLVQWEAVLRAAESLAEDSPEKHERTRFILSLLFGMYLRISELAA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SERWVPSMNDFAKDSNGHWWFTTVGKGNKERQIAVSDAMLESLTRWRLFLGLTPLPSPAD
HCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NSPLLPKLRGHGPMSDTAPIRRIVQHCFDLAEEQLRLNGLSEEADNLSAATVHWLRHTGI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHCCC
SEDVKIRPREHVRDDAGHSSSATTDRYIDIEKQARYQSARKKIIQPSE
CCCCEECCHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIMKTKLLPLFDNLNHIHKNHENVILPDARFHNDFTYCLSFLKSYIGSEGTFNSYRRETE
CCCCCCCHHHHHHHHHHHCCCCCEECCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHH
RLLQWSWLVKNSTIDSLRRDDIEQYIHFCQNPPKTWISLKKVPRFIEKNGNRIPNEEWRP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCH
FVVTLSKVSRKNGHLASIDQFKLSQGAVQEIFAILSTLFNFLIAEEYLISNPVALIRQKS
HEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KFIRKRQHNAPVRRLSLVQWEAVLRAAESLAEDSPEKHERTRFILSLLFGMYLRISELAA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SERWVPSMNDFAKDSNGHWWFTTVGKGNKERQIAVSDAMLESLTRWRLFLGLTPLPSPAD
HCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NSPLLPKLRGHGPMSDTAPIRRIVQHCFDLAEEQLRLNGLSEEADNLSAATVHWLRHTGI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHCCC
SEDVKIRPREHVRDDAGHSSSATTDRYIDIEKQARYQSARKKIIQPSE
CCCCEECCHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA