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The map label for this gene is fliN [H]

Identifier: 52842018

GI number: 52842018

Start: 1997963

End: 1998292

Strand: Reverse

Name: fliN [H]

Synonym: lpg1791

Alternate gene names: 52842018

Gene position: 1998292-1997963 (Counterclockwise)

Preceding gene: 52842019

Following gene: 52842017

Centisome position: 58.81

GC content: 40.91

Gene sequence:

>330_bases
ATGACTCAAGTGAACGAAACCAGCACAGAGCAATTAAATCAAGGGAATCCACTGAATCCAGATCCTGGCAATGAGAAATT
GGAATTAATTTTAGATATTCCTGTCTCAGTGACTGTCGAAATCGGCCGTACCAAAATGACTATTCGTAATTTACTGCAAT
TAAATCAGGGAGGAATCGTAGCGCTTGATAGGCTGGCTGGTGATCCCCTTGATGTGCTAGTCAATGGTACTTTGGTCGCA
CATGGTGAAGTCGTTGTAGTTAACGATAAATTTGGTGTCAGATTAACTGATATCGTTAGCAAGGCTGAACGAATAAAACG
TCTCAAATGA

Upstream 100 bases:

>100_bases
GGATATAGAAGGGACACCAAGCTTTACTGCAACCTTAGGCAGTGCCAATGAAAAGCGAGCTTTGAAAGTTATTAAAATAA
TACGTTATTAGGGGATAAGG

Downstream 100 bases:

>100_bases
AAAGCAAAGTACTCCATCTTGCATTTTTGAGTCTTTCGCTAATCAGTTCGGTCGGTTGGTCATCTACTTTAAGCCCAAAC
ACGATCAGCTATGGCGAACT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MTQVNETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLDVLVNGTLVA
HGEVVVVNDKFGVRLTDIVSKAERIKRLK

Sequences:

>Translated_109_residues
MTQVNETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLDVLVNGTLVA
HGEVVVVNDKFGVRLTDIVSKAERIKRLK
>Mature_108_residues
TQVNETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLDVLVNGTLVAH
GEVVVVNDKFGVRLTDIVSKAERIKRLK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=85, Percent_Identity=62.3529411764706, Blast_Score=118, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11879; Mature: 11748

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVNETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIV
CCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHCCCCCEE
ALDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKRLK
EEECCCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVNETSTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIV
CCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHCCCCCEE
ALDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKRLK
EEECCCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]