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The map label for this gene is ybjS [H]

Identifier: 52841858

GI number: 52841858

Start: 1800317

End: 1801303

Strand: Reverse

Name: ybjS [H]

Synonym: lpg1630

Alternate gene names: 52841858

Gene position: 1801303-1800317 (Counterclockwise)

Preceding gene: 52841859

Following gene: 52841857

Centisome position: 53.01

GC content: 36.98

Gene sequence:

>987_bases
ATGATTTCAGTTGTAACCGGCGCTACAGGATGTTTAGGTTTAAATCTTACAAGACGCTTGATTAAGGAAGGCCATGCAGT
CATTGCATTAGGACGCAATTTGCAGTTGGGTGAAATAATAAGCCAAATAGGAGCAACATTTGTTCCACTCGATTTAAAGG
ATCTGGAGTCTTTGTCTTTGATAAGTCAAAATGCGGATTTCATATTTCATTGCGCAGCTTTATCAAGCCCCTGGGGAAAA
TATAAAGATTTTTATCAGGCTAATGTCATAGGGACTCACAATGTCGTTCAGGCAACTCCCAGTCAGGCTCGACTTGTTTA
TGTCTCCACTCCTAGTATTTATTTTGATTTTACCGAGAAGCACAATATTAAAGAAAATGCACTTTTACCAGCAAAACCGG
TCAATTATTATGTGCAAACCAAATTAATTGCTGAATCCATCGTAGATAAAGCTCAACTACAGCATGATCTGGATGTGATT
ACCATACGTCCCAGAGGAATTTTTGGACCATATGATCGCGCTATTTTCCCCCGTTTATTGAAAGCAGAGCGCCAAGGGGT
GCTTCCAATCATTGGTTCAGGTAATCATTTGATTGATATTACTTTTGTAGAGAATGTAGTGGAAAGCCTGATTTTGGCTG
CTTTGGCAGATAAATGCTATTCAGGGAAAAAATATAATATCACTAATGATGAACCTCGGACTTTTATTGATATCATTTCA
AGGATGTTTTCTGCTCTTAATAAACCATTAAAAACCAGAAGCATTCCTTATAATCACGCAAGATTTGTCGCAAAGTTTCT
TGAGTTTTTGCATCGGTTGCTTTATCTGAAAACAGAACCAAAGATTACAGAGTATGGTGTCGGAGTGTTGGCTTTTGGAC
AAACATTAAATATTGAAGAGGCAAAAAAAGATTTAAAGTATAAGCCAATTTATAGCATTGATGAGGGTATAATGAAATTT
GCTGAATGGTATTGTTCATGCATATAG

Upstream 100 bases:

>100_bases
CATTTGATCCATAATCATAATTTAGAACGCGGGCAGTTGGTTTATTTATTAGGTACTGGCGCTGGATTGTCAGCTGCTGG
AATGATACTGGAGTATTAGT

Downstream 100 bases:

>100_bases
AGTATCAGTTATTTGAAGCTGGCTATTGCAAACATTGCGAACGCATGACTTTAAAAAATGGGAAAATCAGACAGCGTGAA
TATCCATCCTTCTGTGCTCT

Product: 3-beta-hydroxysteroid dehydrogenase/isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MISVVTGATGCLGLNLTRRLIKEGHAVIALGRNLQLGEIISQIGATFVPLDLKDLESLSLISQNADFIFHCAALSSPWGK
YKDFYQANVIGTHNVVQATPSQARLVYVSTPSIYFDFTEKHNIKENALLPAKPVNYYVQTKLIAESIVDKAQLQHDLDVI
TIRPRGIFGPYDRAIFPRLLKAERQGVLPIIGSGNHLIDITFVENVVESLILAALADKCYSGKKYNITNDEPRTFIDIIS
RMFSALNKPLKTRSIPYNHARFVAKFLEFLHRLLYLKTEPKITEYGVGVLAFGQTLNIEEAKKDLKYKPIYSIDEGIMKF
AEWYCSCI

Sequences:

>Translated_328_residues
MISVVTGATGCLGLNLTRRLIKEGHAVIALGRNLQLGEIISQIGATFVPLDLKDLESLSLISQNADFIFHCAALSSPWGK
YKDFYQANVIGTHNVVQATPSQARLVYVSTPSIYFDFTEKHNIKENALLPAKPVNYYVQTKLIAESIVDKAQLQHDLDVI
TIRPRGIFGPYDRAIFPRLLKAERQGVLPIIGSGNHLIDITFVENVVESLILAALADKCYSGKKYNITNDEPRTFIDIIS
RMFSALNKPLKTRSIPYNHARFVAKFLEFLHRLLYLKTEPKITEYGVGVLAFGQTLNIEEAKKDLKYKPIYSIDEGIMKF
AEWYCSCI
>Mature_328_residues
MISVVTGATGCLGLNLTRRLIKEGHAVIALGRNLQLGEIISQIGATFVPLDLKDLESLSLISQNADFIFHCAALSSPWGK
YKDFYQANVIGTHNVVQATPSQARLVYVSTPSIYFDFTEKHNIKENALLPAKPVNYYVQTKLIAESIVDKAQLQHDLDVI
TIRPRGIFGPYDRAIFPRLLKAERQGVLPIIGSGNHLIDITFVENVVESLILAALADKCYSGKKYNITNDEPRTFIDIIS
RMFSALNKPLKTRSIPYNHARFVAKFLEFLHRLLYLKTEPKITEYGVGVLAFGQTLNIEEAKKDLKYKPIYSIDEGIMKF
AEWYCSCI

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=330, Percent_Identity=30.9090909090909, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI8393516, Length=330, Percent_Identity=30.9090909090909, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI239745448, Length=329, Percent_Identity=27.355623100304, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI310132178, Length=329, Percent_Identity=27.355623100304, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI310113012, Length=329, Percent_Identity=27.355623100304, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI116268111, Length=347, Percent_Identity=26.5129682997118, Blast_Score=83, Evalue=4e-16,
Organism=Escherichia coli, GI87081792, Length=331, Percent_Identity=35.0453172205438, Blast_Score=204, Evalue=9e-54,
Organism=Escherichia coli, GI1788353, Length=367, Percent_Identity=20.9809264305177, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17509709, Length=278, Percent_Identity=25.1798561151079, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17570557, Length=285, Percent_Identity=25.9649122807018, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321437, Length=282, Percent_Identity=32.9787234042553, Blast_Score=114, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 36858; Mature: 36858

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVVTGATGCLGLNLTRRLIKEGHAVIALGRNLQLGEIISQIGATFVPLDLKDLESLSL
CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCEEECCCHHHHHHHHH
ISQNADFIFHCAALSSPWGKYKDFYQANVIGTHNVVQATPSQARLVYVSTPSIYFDFTEK
HHCCCCEEEEEEHHCCCCHHHHHHHHCCEECCCCCEECCCCCCEEEEEECCCEEEEECCC
HNIKENALLPAKPVNYYVQTKLIAESIVDKAQLQHDLDVITIRPRGIFGPYDRAIFPRLL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
KAERQGVLPIIGSGNHLIDITFVENVVESLILAALADKCYSGKKYNITNDEPRTFIDIIS
HHHHCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
RMFSALNKPLKTRSIPYNHARFVAKFLEFLHRLLYLKTEPKITEYGVGVLAFGQTLNIEE
HHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEECCCCCHHH
AKKDLKYKPIYSIDEGIMKFAEWYCSCI
HHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MISVVTGATGCLGLNLTRRLIKEGHAVIALGRNLQLGEIISQIGATFVPLDLKDLESLSL
CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCEEECCCHHHHHHHHH
ISQNADFIFHCAALSSPWGKYKDFYQANVIGTHNVVQATPSQARLVYVSTPSIYFDFTEK
HHCCCCEEEEEEHHCCCCHHHHHHHHCCEECCCCCEECCCCCCEEEEEECCCEEEEECCC
HNIKENALLPAKPVNYYVQTKLIAESIVDKAQLQHDLDVITIRPRGIFGPYDRAIFPRLL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
KAERQGVLPIIGSGNHLIDITFVENVVESLILAALADKCYSGKKYNITNDEPRTFIDIIS
HHHHCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
RMFSALNKPLKTRSIPYNHARFVAKFLEFLHRLLYLKTEPKITEYGVGVLAFGQTLNIEE
HHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEECCCCCHHH
AKKDLKYKPIYSIDEGIMKFAEWYCSCI
HHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]