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The map label for this gene is rnhB

Identifier: 52841603

GI number: 52841603

Start: 1519616

End: 1520191

Strand: Direct

Name: rnhB

Synonym: lpg1373

Alternate gene names: 52841603

Gene position: 1519616-1520191 (Clockwise)

Preceding gene: 52841599

Following gene: 52841609

Centisome position: 44.72

GC content: 40.28

Gene sequence:

>576_bases
ATGAATACTGTGCTAAAAATATTGATGGCTGGGGTCGATGAAGTGGGGAGAGGACCACTTGCGGGTGCCGTTGTAACCGC
AGCCGTTATTTTAAAAAAACCAATAGATGGGCTTACCGACTCAAAAAAATTAAGCCCAAAGCAAAGAAATTTATTAGCAA
TTAGAATAAAGGAAGAAGCGTTAGCTTTTGCCTATGGGCGAGCAGAAGTTGAGGAAATAGATCAATTAAATATTCATCAT
GCTACTCTATTAGCTATGCGAAGGGCAGTTGAAGCTTTACCCATTCAGCCAGATAATGTCTTTGTCGATGGAGCTTTTAC
TCCTCAATTGAACATACCATGCAAGGCTATTGTCCAAGGAGATAGCTTGATACCTGAAATTAGTGCGGCATCCATCCTCG
CCAAGGTATTGCGTGATGAAGAAATGGTAGCTCTTGATAAAATATATCCAGGATATGGTTTTGCAGAACATAAAGGTTAT
GCAACCCCTGTTCATAAAGAAGCGCTAATGCGTTTGGGTCCTTGTAAAATACATAGAAGAAGTTACTCCCCTGTTGCGGA
TTTGATTTCAAAGTAA

Upstream 100 bases:

>100_bases
AACTCCTGAGATTGGTTCAAATCAAAGAAGTCGATTCTTGTCTTGCACTTGCATTCAATAGCTATTATCTTACGCCTAAT
TTTTCGCAGGGAGCAGTTAA

Downstream 100 bases:

>100_bases
AACTCTGAGTGGTATTAATTTGGAAAATACCGTTCAAATAAAAATACATAAGAAATAGCTTTTAAAATGTCATAATATGA
TTTATGCAAATCAGAGCATA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNTVLKILMAGVDEVGRGPLAGAVVTAAVILKKPIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGRAEVEEIDQLNIHH
ATLLAMRRAVEALPIQPDNVFVDGAFTPQLNIPCKAIVQGDSLIPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGY
ATPVHKEALMRLGPCKIHRRSYSPVADLISK

Sequences:

>Translated_191_residues
MNTVLKILMAGVDEVGRGPLAGAVVTAAVILKKPIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGRAEVEEIDQLNIHH
ATLLAMRRAVEALPIQPDNVFVDGAFTPQLNIPCKAIVQGDSLIPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGY
ATPVHKEALMRLGPCKIHRRSYSPVADLISK
>Mature_191_residues
MNTVLKILMAGVDEVGRGPLAGAVVTAAVILKKPIDGLTDSKKLSPKQRNLLAIRIKEEALAFAYGRAEVEEIDQLNIHH
ATLLAMRRAVEALPIQPDNVFVDGAFTPQLNIPCKAIVQGDSLIPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGY
ATPVHKEALMRLGPCKIHRRSYSPVADLISK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=180, Percent_Identity=62.2222222222222, Blast_Score=211, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 20772; Mature: 20772

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVLKILMAGVDEVGRGPLAGAVVTAAVILKKPIDGLTDSKKLSPKQRNLLAIRIKEEA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHHH
LAFAYGRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFVDGAFTPQLNIPCKAIVQG
HHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHEEECC
DSLIPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRR
CCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCC
SYSPVADLISK
CCCHHHHHHCC
>Mature Secondary Structure
MNTVLKILMAGVDEVGRGPLAGAVVTAAVILKKPIDGLTDSKKLSPKQRNLLAIRIKEEA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHHH
LAFAYGRAEVEEIDQLNIHHATLLAMRRAVEALPIQPDNVFVDGAFTPQLNIPCKAIVQG
HHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHEEECC
DSLIPEISAASILAKVLRDEEMVALDKIYPGYGFAEHKGYATPVHKEALMRLGPCKIHRR
CCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCC
SYSPVADLISK
CCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA