| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
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The map label for this gene is gspD [H]
Identifier: 52841551
GI number: 52841551
Start: 1452399
End: 1454774
Strand: Reverse
Name: gspD [H]
Synonym: lpg1320
Alternate gene names: 52841551
Gene position: 1454774-1452399 (Counterclockwise)
Preceding gene: 52841553
Following gene: 52841550
Centisome position: 42.82
GC content: 40.11
Gene sequence:
>2376_bases ATGCGCTCGATAGTAATTATACTTTTAGCCTTCGTTTGTTGTTCATTAGTACGTGCTAATGATGTCAATATTTCAACCGT AACCAAAGATGGCAATACATTTTTTTATCTTCAAGCTGGTGCCTATAATCTCGAAAAAGACGCTAAAATACGCCAAAATG AACTTGCCAAATTAGTCGATCAAAAAGTTGAAATTAAAAACCTGGCTGACAAACATCTTTACCTTGTGCAGATTGGTCCA ATTGATGATTACCAAACTGCAAGAGCACTCAAAGAAAAGTTATCTCAAAAAACAGAAAAACAGTTTAATAAAATTAGCAA AAATCAAACCTCTTCACTTGAGGTAAGCCAACTGCCTAAAAATATGGAACAAGCGCAAACGGCTCCTCCAGGCAGTAAAT TATGGAATTTACGTAACGCTGATATTAGAGCCGTAATCGCAGAAGTCTCTCGAATTACAGGTAAAAATTTTGTTATTGAT CCCAGAGTACAAGGAAAAGTATCGATTGTTTCATCAACGCCGTTATCCAGCCGCGAGCTATATCAAGTCTTTCTCTCAGT ACTGCAGGTATCAGGTTATGCCGCAATACCTAATGGAGAAATTATCAAAATTATTCCCAATATTGATGCAAAAACACAGT CACCTGATTTACTCAGTGGAATGAAGAGTCCTCCACGAGGTGACGATATGATGGTCGCCGTAATACCGGTTCATTATGTT CCTTCTGAACAACTGGTACCTGTTCTAAGGCCACTAATGCCCCAATGGAGCAGCGTATCTGCCTATGCTCCTTCTAATAT GTTGATTCTGTCTGGTCGAGCAAACAATATTAAAAGCCTTGCGGAAATTATCAAACAAGTAGATAGCTCAAGTGCAAACG GCATAGACATGGTTCGTTTACATCATGCTTTGGCTATGGATGTTGCAAACACTTTAAAAGACCTGGTTAAAACTCAACCT GGTATCGGCAGCAGAACACAAATTACCATTGCTGCAGATGACCGTTCCAACTCAATTTTAGTCAGTGGGAGCAAAACGGA TAGAATTCGTTTGCGAATGCTCATATTGAAACTGGATAAAGACAGCTCAACAGGAGTCAATTCAAATACACAAGTTGTTT ACCTGAATTATTTAAGAGCTGAAGATTTAGTCCCTATACTGGCAGGTATAGCCCAAGCCAATTTTAGTGGAAATGTAGGA ACAACCATTGGAACCATTACAAGACCCGCATTAGACAGCACCAACCCTGCCTCCAGTCTTGCCAATACCTCTGCCGATGG GCAAAGCTCTTCATTAAGCTCCACTTCGACCAGTTCTGCCCCTATGAATGCCTCAGGAGCGACAGCAAACACGACATCAG CAAGTACTCAAAATGAAGGCTCTACCAAGCCTACTGTACAGATAATAGGAGAACCGAACACTAACTCTATTATTCTTAAT GCACCTGCTTCAATTATTCGTATTCTAAAAACAGTCATTTCTCAGCTAGATATAAAACCTGCTCAACTATTAATCGAGGC CCTCGTTGCTGAAGTGGATGAAAAGGACGTTAACAATCTGGGAATAGAGTGGGGATCAAATCAACAAACAGGCAATCCCA AGGACTTCAGACCAGGCTTTGCCATTATAAACAGTAAAACCAGGATTGACGATTTCCAGGCTCAAATTTATGCCTTGGCA AGAGAGCAAAGAGCAAATATTTTATCAACTCCCTCCGTAGTAGTCCTTGATAATCGTCAAGCAAAAATACTCATAGGTAA ACAGGTCTCAATAGCAACAACCAGCTACCCCAATAATGCAGGAGGCACTACCACAGCAAGTCCTTTCACAACATTTGACA GGGTTAACGTTGCGTTGCACCTTTATGTAAGGCCGCAAATTACTCGCGGACAAGGAATTCAACTACAGATTGATCAAGGG AATGATACTTTGGATCCTGCAACTGCTACAACAGACAACACAACAACCCCCACTTTTAATATAAGCAGTATTGTAACTTC AGTTCATGTAGAAAGTGGTGATATTGTAGTACTTGGGGGGTTGATTCAGGACAGTATTGGAAATGACAATAATAAATTAC CCATTTTAGGAGATATCCCTGGAATAGGCAGATTGTTTCAACGTAATATTCGTAACAGAGACAAGCGAGTACTCATGGTA TTTATTAAACCTATCATATTACGCAACGAAAGAGATAACTTGCATGTCACAGGCGAAAAATACAATTATGTCCGTCAATA TCAGCTGGATTGGATTCGCTCCCAAGAGGCTTTTGAACAAACAGATGATGAAACAGTGTTGCCCCCATTAACTCAAGGCA ATCTACCAGTACCTTTTAGTACTCCTCCCCAATACTCATCAAAAATGACCAAATAA
Upstream 100 bases:
>100_bases TAAAAACCACTTAAATTTCCTGCTCTAAGTTATTAAAAAAGCTATGGTAAGCAGTCAAATTTAGTTATTATGTCATTATC CATTATTTTACGGTTTTTAA
Downstream 100 bases:
>100_bases ATCATGGAAAATGAAGAAAAATCACTTAAAATTCCTTACAGTTTTGCCAAAAGCAATGGAATTGTTGTGGGAGAAATACA AGAAAATCTGGCTATTGTCT
Product: type II protein secretion LspD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP IDDYQTARALKEKLSQKTEKQFNKISKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG NDTLDPATATTDNTTTPTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSTPPQYSSKMTK
Sequences:
>Translated_791_residues MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP IDDYQTARALKEKLSQKTEKQFNKISKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG NDTLDPATATTDNTTTPTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSTPPQYSSKMTK >Mature_791_residues MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP IDDYQTARALKEKLSQKTEKQFNKISKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG NDTLDPATATTDNTTTPTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSTPPQYSSKMTK
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=654, Percent_Identity=31.8042813455657, Blast_Score=295, Evalue=7e-81, Organism=Escherichia coli, GI1789793, Length=273, Percent_Identity=23.4432234432234, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 86101; Mature: 86101
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVD CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH QKVEIKNLADKHLYLVQIGPIDDYQTARALKEKLSQKTEKQFNKISKNQTSSLEVSQLPK HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC NMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVIDPRVQGKVSIVSSTPLSSREL HHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCHHHH YQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV HHHHHHHHHHCCEEECCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEC PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRL CCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHH HHALAMDVANTLKDLVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDK HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECC DSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSL CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHH ANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGF CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCE AIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNA EEECCCCCCHHHHHHHHHHHHHHHCCEECCCCEEEECCCCEEEEEECEEEEEEECCCCCC GGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPTFN CCCCCCCCCCEEEEEEEEEEEEEECEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE ISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV HHHHEEEEEECCCCEEEECCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFS EECHHHEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TPPQYSSKMTK CCCCHHHCCCC >Mature Secondary Structure MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVD CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH QKVEIKNLADKHLYLVQIGPIDDYQTARALKEKLSQKTEKQFNKISKNQTSSLEVSQLPK HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC NMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVIDPRVQGKVSIVSSTPLSSREL HHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCHHHH YQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV HHHHHHHHHHCCEEECCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEC PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRL CCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHH HHALAMDVANTLKDLVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDK HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECC DSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSL CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHH ANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGF CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCE AIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNA EEECCCCCCHHHHHHHHHHHHHHHCCEECCCCEEEECCCCEEEEEECEEEEEEECCCCCC GGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPTFN CCCCCCCCCCEEEEEEEEEEEEEECEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE ISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV HHHHEEEEEECCCCEEEECCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFS EECHHHEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TPPQYSSKMTK CCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]