Click here to switch to the map view.

The map label for this gene is ygeR [C]

Identifier: 52841514

GI number: 52841514

Start: 1411187

End: 1411930

Strand: Direct

Name: ygeR [C]

Synonym: lpg1283

Alternate gene names: 52841514

Gene position: 1411187-1411930 (Clockwise)

Preceding gene: 52841513

Following gene: 52841515

Centisome position: 41.53

GC content: 40.05

Gene sequence:

>744_bases
ATGATGCGCCTATTTCGCAAACAATTAATTTGTATTTTTTTTATCTTAAGTGCTGCTGGTTGTGGGACAAGAAGTGATTT
GGCTCCTGTTACCGAGCTAAAATGGCAGCCTTATTCAAAATATCAGAAATTCCATACGGTGCGATCAGGTGAGACCCTTT
ATGCTATAGCATTTCGTTATGATACTGATTATAGGCGGCTTGCGATCAACAATCACCTAAGGCCACCTTATTCTTTGCGA
GTAGGACAAGTTTTAAGTTTAAAAGGCATCGTGCCAAAATCAAATCACTTTCATTCAGCTCCCAGAGCTAACTTACATAT
TACCCATAAGCCAAAACAAAAAACTATTTATTCTCCAGCTTATAATGTACGTTCTTCCTCTGGTTGGCTATGGCCAGTTA
CTGGTCGTGTTGTTACAACATTCATTCCTTCTCAGGGGAAAAAAGGCATAAATATTGCATGTAACAGAGGAGACAAAGTT
AGAGCTTCAGCGAGTGGAGTTGTGGCTTATGCTGGCAGCGGTTTGGCTGGGTATGGTAATTTAATTATCATTAAACACAG
TAATGAATATTTAACTGCATACGGCAACAATGCCAGAAACCTGGTGACAGAAGGACAGCGCGTTAATGCAGGGCAGGTAA
TAGCAGAAGCTGGGTTAATAGATAGATCATACTGGGGTGTGCATTTTGAAATTAGAAGAGCAGGGGTGCCAGTTAATCCA
TTGAATTATCTACAAAAAGGTTGA

Upstream 100 bases:

>100_bases
ACCGCTTCATTTAGACATGACTCATTATAAGCTATTTGATCATTTATCTAACTTACTTAACGAAATTTGCATAGAAAATT
AATAAATAATAAATGAGATA

Downstream 100 bases:

>100_bases
CATATAACTCATAGTTATAGCAACAATAGGCTTGTTAAGAAGTAAAAAACTATTTCAAGGCATAGCTAAACATATAGGTG
ATACAATGCAAGATGATGAA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MMRLFRKQLICIFFILSAAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAINNHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKTIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKV
RASASGVVAYAGSGLAGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVNAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG

Sequences:

>Translated_247_residues
MMRLFRKQLICIFFILSAAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAINNHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKTIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKV
RASASGVVAYAGSGLAGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVNAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG
>Mature_247_residues
MMRLFRKQLICIFFILSAAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRYDTDYRRLAINNHLRPPYSLR
VGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKTIYSPAYNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKV
RASASGVVAYAGSGLAGYGNLIIIKHSNEYLTAYGNNARNLVTEGQRVNAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
LNYLQKG

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=247, Percent_Identity=36.0323886639676, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1789099, Length=254, Percent_Identity=35.8267716535433, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 27536; Mature: 27536

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRLFRKQLICIFFILSAAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRY
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEE
DTDYRRLAINNHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKTIYSPA
CCCCEEEEECCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
YNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVRASASGVVAYAGSGLAGYGN
CCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCC
LIIIKHSNEYLTAYGNNARNLVTEGQRVNAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
EEEEEECCCEEEEECCCCCHHCCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCCCCCH
LNYLQKG
HHHHCCC
>Mature Secondary Structure
MMRLFRKQLICIFFILSAAGCGTRSDLAPVTELKWQPYSKYQKFHTVRSGETLYAIAFRY
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCEEEEEEEEE
DTDYRRLAINNHLRPPYSLRVGQVLSLKGIVPKSNHFHSAPRANLHITHKPKQKTIYSPA
CCCCEEEEECCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
YNVRSSSGWLWPVTGRVVTTFIPSQGKKGINIACNRGDKVRASASGVVAYAGSGLAGYGN
CCCCCCCCEEEEECCEEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEEECCCCCCCCC
LIIIKHSNEYLTAYGNNARNLVTEGQRVNAGQVIAEAGLIDRSYWGVHFEIRRAGVPVNP
EEEEEECCCEEEEECCCCCHHCCCCCCCCCCHHHHHCCCEECCCCEEEEEEEECCCCCCH
LNYLQKG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]