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The map label for this gene is virB9

Identifier: 52841480

GI number: 52841480

Start: 1378370

End: 1379122

Strand: Reverse

Name: virB9

Synonym: lpg1248

Alternate gene names: 52841480

Gene position: 1379122-1378370 (Counterclockwise)

Preceding gene: 52841481

Following gene: 52841479

Centisome position: 40.59

GC content: 44.49

Gene sequence:

>753_bases
ATGAAAAAAATACTGTTGAGTGCGGCAGTCCTGCTCTTGTCATTAGGCACCTATGCCCAAAATAACCCAACGTCCTTACC
AACCGACATCCGAATCAAGAAAGTGGTTTATCGGGAAAACGATGTGATTCCAGTGCACGGCATTCCCTTTACCACCACGC
AAATTCAATTTGCGAAGCAAGAGCGAGTACTTGATATTGAAGGCGGTGACACCACCGCATGGATGGTGACCTATCATCCA
CAACTGGAAAATATGATTTTTATAAAACCCACAATGTTTGATTCCAAAACTAATATGACGGTGATTACCAATCAACGCGC
CTACTATTTTAGCCTGACCAGCGCTAAAAAACTGGAGCAGGAGCCAGGTAAAAAAACCTATGCCTTGAAATTTGAATACC
CCCAACCACAACCCGTTAACACAAAAAATACGACTCCCAATAAAACGGTGCATCCAAAAGTGGTCAACACCGCTTATCGG
TTTAGTGGCAGTCCGCAGCTTGTTCCTCGTCATGTATTTGATGACGGCAAGTTCACCTATTTTGAGCTAAGTGCTCAGGG
CAGCGTTCCAGCGATTTTTGCGGTGGATGACCAAAGCGGAAAGGAATCAACCGTCAATACAAGGCGCGAAGGGAAATTCA
TTGTTGTACAGCGTTTAGCTCCGCAATTTACTTTAAGACAAGGTGGCCTTACCGCTTCTGTTTTTAATACACCGGAAATC
AATCGAATCAGAGCCAACAGGAGGCCAAAATGA

Upstream 100 bases:

>100_bases
ACACCAATCCCCCGGATTCCCCTGAAACCCGCTGGAAAAACTGGGATGGATTTGAAGTCACGCGCTACTCAAGGCAAACC
CGTTTAATGGAGGCTCAAGC

Downstream 100 bases:

>100_bases
GCATTGATGATAAAAAGCGGGAAGACTCTTTGGGCAATCGAACTCAGGTTGCCAAAAATCCAAAGCACACAGCAATCAAA
GACAAGTTATTGCTCGCAGG

Product: LvhB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKKILLSAAVLLLSLGTYAQNNPTSLPTDIRIKKVVYRENDVIPVHGIPFTTTQIQFAKQERVLDIEGGDTTAWMVTYHP
QLENMIFIKPTMFDSKTNMTVITNQRAYYFSLTSAKKLEQEPGKKTYALKFEYPQPQPVNTKNTTPNKTVHPKVVNTAYR
FSGSPQLVPRHVFDDGKFTYFELSAQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNTPEI
NRIRANRRPK

Sequences:

>Translated_250_residues
MKKILLSAAVLLLSLGTYAQNNPTSLPTDIRIKKVVYRENDVIPVHGIPFTTTQIQFAKQERVLDIEGGDTTAWMVTYHP
QLENMIFIKPTMFDSKTNMTVITNQRAYYFSLTSAKKLEQEPGKKTYALKFEYPQPQPVNTKNTTPNKTVHPKVVNTAYR
FSGSPQLVPRHVFDDGKFTYFELSAQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNTPEI
NRIRANRRPK
>Mature_250_residues
MKKILLSAAVLLLSLGTYAQNNPTSLPTDIRIKKVVYRENDVIPVHGIPFTTTQIQFAKQERVLDIEGGDTTAWMVTYHP
QLENMIFIKPTMFDSKTNMTVITNQRAYYFSLTSAKKLEQEPGKKTYALKFEYPQPQPVNTKNTTPNKTVHPKVVNTAYR
FSGSPQLVPRHVFDDGKFTYFELSAQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNTPEI
NRIRANRRPK

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 28286; Mature: 28286

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLSAAVLLLSLGTYAQNNPTSLPTDIRIKKVVYRENDVIPVHGIPFTTTQIQFAKQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEECCCCCCEEEEEEECC
ERVLDIEGGDTTAWMVTYHPQLENMIFIKPTMFDSKTNMTVITNQRAYYFSLTSAKKLEQ
CEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCEEEEEECCHHHHHC
EPGKKTYALKFEYPQPQPVNTKNTTPNKTVHPKVVNTAYRFSGSPQLVPRHVFDDGKFTY
CCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCEEEECCCCCEEE
FELSAQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNTPEI
EEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCCCC
NRIRANRRPK
EEECCCCCCC
>Mature Secondary Structure
MKKILLSAAVLLLSLGTYAQNNPTSLPTDIRIKKVVYRENDVIPVHGIPFTTTQIQFAKQ
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEECCCCCCEEEEEEECC
ERVLDIEGGDTTAWMVTYHPQLENMIFIKPTMFDSKTNMTVITNQRAYYFSLTSAKKLEQ
CEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCEEEEECCCEEEEEECCHHHHHC
EPGKKTYALKFEYPQPQPVNTKNTTPNKTVHPKVVNTAYRFSGSPQLVPRHVFDDGKFTY
CCCCEEEEEEEECCCCCCCCCCCCCCCCEECCCEEEEEEEECCCCCCCEEEECCCCCEEE
FELSAQGSVPAIFAVDDQSGKESTVNTRREGKFIVVQRLAPQFTLRQGGLTASVFNTPEI
EEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCEEEEEECCCCC
NRIRANRRPK
EEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA