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The map label for this gene is ybeQ [H]

Identifier: 52841406

GI number: 52841406

Start: 1294669

End: 1296156

Strand: Direct

Name: ybeQ [H]

Synonym: lpg1172

Alternate gene names: 52841406

Gene position: 1294669-1296156 (Clockwise)

Preceding gene: 52841405

Following gene: 52841407

Centisome position: 38.1

GC content: 39.05

Gene sequence:

>1488_bases
TTGCAGGGAGGTATGATGAAACAATTGGTTGTTGCAGGATTTTTCTTATTACTTCTAACTTCCCCTTTATCAGCGCTGGA
TGTTGATACCTATCGTAGTTCACAAAAACAATTCAATACAGAGGATAAGGCGGAACAGGGTGATGCTCAAGCACAGTTTG
AATTAGGGCTCAAATATGAAAAGGGTGATGGAGTAAATAAAGATTTAAAGAAAGCGATTTATTGGTATCAGAAAGCTGCA
GATCAAGGACAAGCTGAGGCACAAAATAATCTCGGTGTATTGTATCTTAAAGGAGAGGGTGTGCCCCAAAACAGTCAGCA
AGCAATGTATTGGTTTAAGAAGGCTTCGGAACAGGGTTTGGCAATTGGTCAAAATAATATAGGGATCCTATATGAAAATG
GCCTGGGTGTTAAAAAAGATCCGGGCCAGGCTTTTATCTGGTATCAAAAGGCCGCAGAAGGCGGAAATTCAGACGGACAA
TATAACCTTGCAGTCATGTACATGTATGGGAATGGTATACCAAAAGATATCAAGAAGGCGATTCACTGGTATATCAAAGC
AGCAGAGCAAGGAGATCTTGATGCTCAAAATAATCTTGGTGTTCTTTATGAGCGAGGCGAAGAGGTTCCAAGAGATTTAA
AAGCAGCTATTAGTTGGTATACCAGAGCAGCAAATGAAGGTTCACTGATTGCTCAAACTAACCTTGGTGTATTGTATATG
ACTGGTGATCCTTCCATTCAAGATGGCAAGAAAGCAATATATTGGTATGAAAAAGCAGCGGCACAAGGTGGGGAAAAAGC
TCAAAATAATCTTGGGTATATTTATGAACAAGGAATTGGTACCGAAAAGGATATGAAAAAGGCTATTTACTGGTACGAAA
AAGCCGCAGAGAATGGATTTACTCTGGCTCAAAATAATTTAGGTGTTCTCTATTCAAATGATGGCGAGCTGCAAGATTAC
AAAAAGGCTTATTTATGGTTCAAAAAAGCCGCAGATCAAGGATTTGCCGAAGCCCAAAATAACTTGGGTTTAATGTATAT
GAAAGGTAATGGATTGTCAGTTAATTATCACGAAGCAGTCTTGTGGTACAAGAGAGCGGCAGAACAAGGATTACCTTTAG
CGCAACATAATCTCGCGATTATGTATATGAAAGGCTTGGGGATAAAGAAAGACAATAAACTGGCCATTAAATGGTACCAA
AAAGCTGCTGAAAAAGGATTGGATCTGGCGCAAAACAATTTGGCGGTTATGTATATACGTGGTGAAGGAGTAAAAAGAGA
TTTTAAGAAGGCCATGTATTGGTATCAAAAGGCAGCTGAACAAGGTTTGGATTTGGCACAAATTAATCTGGGTATTATGT
ATCTTGATGGCATGGGTGTTAATAAAGATTTCGCTAAAGCAAAGTATTGGATTGGAAAAGCCAAGGACAGTGGTTCTCAA
GATGCGCTGACCATATGGAATAAAAATAAATTGTGGAAATATCAGTGA

Upstream 100 bases:

>100_bases
ATTTCCCTATTACATCTTACTCCTATAGATGCACTTTGCTTGTGTGGCACCAGAGCGTCAATGTTTATTCATCATCAATT
GTGCTATAATTGAACAATGA

Downstream 100 bases:

>100_bases
TCATTGGTGTGGGTCTTAGTTGATGTATTGTGCAAAATGCTCAAGTCTGGTTATATAATTAAAATACGCTGAATAATCTA
ATGGATTAGAAAAGGATGTC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MQGGMMKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLKYEKGDGVNKDLKKAIYWYQKAA
DQGQAEAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQNNIGILYENGLGVKKDPGQAFIWYQKAAEGGNSDGQ
YNLAVMYMYGNGIPKDIKKAIHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYM
TGDPSIQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGVLYSNDGELQDY
KKAYLWFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQ
KAAEKGLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQ
DALTIWNKNKLWKYQ

Sequences:

>Translated_495_residues
MQGGMMKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLKYEKGDGVNKDLKKAIYWYQKAA
DQGQAEAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQNNIGILYENGLGVKKDPGQAFIWYQKAAEGGNSDGQ
YNLAVMYMYGNGIPKDIKKAIHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYM
TGDPSIQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGVLYSNDGELQDY
KKAYLWFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQ
KAAEKGLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQ
DALTIWNKNKLWKYQ
>Mature_495_residues
MQGGMMKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLKYEKGDGVNKDLKKAIYWYQKAA
DQGQAEAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGLAIGQNNIGILYENGLGVKKDPGQAFIWYQKAAEGGNSDGQ
YNLAVMYMYGNGIPKDIKKAIHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYM
TGDPSIQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGFTLAQNNLGVLYSNDGELQDY
KKAYLWFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAVLWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQ
KAAEKGLDLAQNNLAVMYIRGEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQ
DALTIWNKNKLWKYQ

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=377, Percent_Identity=32.6259946949602, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI151301150, Length=394, Percent_Identity=30.4568527918782, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI217330658, Length=177, Percent_Identity=34.4632768361582, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI217330656, Length=177, Percent_Identity=34.4632768361582, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI154689719, Length=261, Percent_Identity=30.2681992337165, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI33620759, Length=194, Percent_Identity=28.3505154639175, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI87081769, Length=321, Percent_Identity=37.6947040498442, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1786867, Length=99, Percent_Identity=42.4242424242424, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17563256, Length=465, Percent_Identity=27.0967741935484, Blast_Score=134, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6319410, Length=290, Percent_Identity=30.6896551724138, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6319998, Length=280, Percent_Identity=31.4285714285714, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21355295, Length=345, Percent_Identity=34.2028985507246, Blast_Score=154, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 55497; Mature: 55497

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGGMMKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLKYE
CCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEE
KGDGVNKDLKKAIYWYQKAADQGQAEAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGL
CCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCC
AIGQNNIGILYENGLGVKKDPGQAFIWYQKAAEGGNSDGQYNLAVMYMYGNGIPKDIKKA
EECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHH
IHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYM
HHHHHEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEE
TGDPSIQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGF
CCCCCCCCCCEEEEEEEHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
TLAQNNLGVLYSNDGELQDYKKAYLWFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAV
EEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCEEEHHHHH
LWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQKAAEKGLDLAQNNLAVMYIR
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEEE
GEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQ
CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHEEECCCCCCCC
DALTIWNKNKLWKYQ
CEEEEECCCCEECCC
>Mature Secondary Structure
MQGGMMKQLVVAGFFLLLLTSPLSALDVDTYRSSQKQFNTEDKAEQGDAQAQFELGLKYE
CCCCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCHHHHCCCCCEEEEEEEEEE
KGDGVNKDLKKAIYWYQKAADQGQAEAQNNLGVLYLKGEGVPQNSQQAMYWFKKASEQGL
CCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCC
AIGQNNIGILYENGLGVKKDPGQAFIWYQKAAEGGNSDGQYNLAVMYMYGNGIPKDIKKA
EECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCHHHHHH
IHWYIKAAEQGDLDAQNNLGVLYERGEEVPRDLKAAISWYTRAANEGSLIAQTNLGVLYM
HHHHHEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEE
TGDPSIQDGKKAIYWYEKAAAQGGEKAQNNLGYIYEQGIGTEKDMKKAIYWYEKAAENGF
CCCCCCCCCCEEEEEEEHHHHCCCCHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
TLAQNNLGVLYSNDGELQDYKKAYLWFKKAADQGFAEAQNNLGLMYMKGNGLSVNYHEAV
EEEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCEEEHHHHH
LWYKRAAEQGLPLAQHNLAIMYMKGLGIKKDNKLAIKWYQKAAEKGLDLAQNNLAVMYIR
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEEEE
GEGVKRDFKKAMYWYQKAAEQGLDLAQINLGIMYLDGMGVNKDFAKAKYWIGKAKDSGSQ
CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHEEECCCCCCCC
DALTIWNKNKLWKYQ
CEEEEECCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]