Click here to switch to the map view.

The map label for this gene is 52841102

Identifier: 52841102

GI number: 52841102

Start: 939745

End: 940296

Strand: Reverse

Name: 52841102

Synonym: lpg0866

Alternate gene names: NA

Gene position: 940296-939745 (Counterclockwise)

Preceding gene: 52841103

Following gene: 229270458

Centisome position: 27.67

GC content: 36.59

Gene sequence:

>552_bases
ATGCGTAAATTACTAAGACCTTTTTACGAACGTGATACCGTTCTGGTTGCAAAAGAACTTTTAGGTAAATATTTAGTTCA
TCATGATGGATTGGAAGAGAAAATTGGGCGCATTGTAGAAGTCGAAGCCTACCTTGGGCAACATGATTTGGCTTGTCATT
CATCAAAAGGATTGACTAAAAGAACTAAAGTTATGTTTGGGCCAGCAGGCTATGCGTATGTTTATCTAATTTATGGCATG
TATTATTGCATGAACGTAGTCACCGAAAAGGAGGGGATAGGTTCAGCAGTATTAATACGTGCCCTGGAGCCTATCAAAAA
CATTCAAGACAGAACTCAAGGACCAGGGTTATTATCCAAAGCTATGCGCATTGACTCCAAACTGAATCATCGTGATTTAT
TAAGCAATGATTTTTATATTGCTGAGCCAAACAGTCCAACTGATTTTACCATTATAGAAAAACCCAGAATTGGGGTTCAT
TATGCTAAAGAATGGGCTAATGAGTTATTAAGATTTTATATTAAAGACAATCCTTATATTTCGAAAACCTGA

Upstream 100 bases:

>100_bases
ACTGAATGTATCTGGGGTTGGGCAACATAAATTAGCTCGTTATGGCCATTATTTTCTCGAAGCCTTAAACGAATTTTCAG
AAGTCGAGTGAGATTCCGTT

Downstream 100 bases:

>100_bases
TTAGGCCTCGTGCATAAACTGTCTCTTTCATTTTATTGCCGCATTGCAAAGATTTCTGTGATGCTCAGGGTATGTAAAAA
GCGTATTATCGTATTAATGA

Product: 3-methyladenine DNA glycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MRKLLRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTKRTKVMFGPAGYAYVYLIYGM
YYCMNVVTEKEGIGSAVLIRALEPIKNIQDRTQGPGLLSKAMRIDSKLNHRDLLSNDFYIAEPNSPTDFTIIEKPRIGVH
YAKEWANELLRFYIKDNPYISKT

Sequences:

>Translated_183_residues
MRKLLRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTKRTKVMFGPAGYAYVYLIYGM
YYCMNVVTEKEGIGSAVLIRALEPIKNIQDRTQGPGLLSKAMRIDSKLNHRDLLSNDFYIAEPNSPTDFTIIEKPRIGVH
YAKEWANELLRFYIKDNPYISKT
>Mature_183_residues
MRKLLRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTKRTKVMFGPAGYAYVYLIYGM
YYCMNVVTEKEGIGSAVLIRALEPIKNIQDRTQGPGLLSKAMRIDSKLNHRDLLSNDFYIAEPNSPTDFTIIEKPRIGVH
YAKEWANELLRFYIKDNPYISKT

Specific function: Unknown

COG id: COG2094

COG function: function code L; 3-methyladenine DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA glycosylase MPG family

Homologues:

Organism=Homo sapiens, GI62632769, Length=200, Percent_Identity=37, Blast_Score=118, Evalue=3e-27,
Organism=Homo sapiens, GI62632765, Length=200, Percent_Identity=37, Blast_Score=118, Evalue=4e-27,
Organism=Homo sapiens, GI62632771, Length=200, Percent_Identity=37, Blast_Score=117, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): 3MGH_LEGPA (Q5X6N6)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_123257.1
- HSSP:   P29372
- ProteinModelPortal:   Q5X6N6
- SMR:   Q5X6N6
- STRING:   Q5X6N6
- GeneID:   3117259
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp0929
- LegioList:   lpp0929
- eggNOG:   COG2094
- HOGENOM:   HBG664239
- OMA:   AGEEYAN
- ProtClustDB:   CLSK832463
- BioCyc:   LPNE297246:LPP0929-MONOMER
- HAMAP:   MF_00527
- InterPro:   IPR011034
- InterPro:   IPR003180
- Gene3D:   G3DSA:3.10.300.10
- PANTHER:   PTHR10429
- TIGRFAMs:   TIGR00567

Pfam domain/function: PF02245 Pur_DNA_glyco; SSF50486 FMT_C_like

EC number: NA

Molecular weight: Translated: 21029; Mature: 21029

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLLRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTK
CCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEHHHHHCCCCCCCCCCCCCCH
RTKVMFGPAGYAYVYLIYGMYYCMNVVTEKEGIGSAVLIRALEPIKNIQDRTQGPGLLSK
HHEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AMRIDSKLNHRDLLSNDFYIAEPNSPTDFTIIEKPRIGVHYAKEWANELLRFYIKDNPYI
HHHHHCCCCHHHHHCCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
SKT
CCC
>Mature Secondary Structure
MRKLLRPFYERDTVLVAKELLGKYLVHHDGLEEKIGRIVEVEAYLGQHDLACHSSKGLTK
CCHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHEEEHHHHHCCCCCCCCCCCCCCH
RTKVMFGPAGYAYVYLIYGMYYCMNVVTEKEGIGSAVLIRALEPIKNIQDRTQGPGLLSK
HHEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
AMRIDSKLNHRDLLSNDFYIAEPNSPTDFTIIEKPRIGVHYAKEWANELLRFYIKDNPYI
HHHHHCCCCHHHHHCCCCEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
SKT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA