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The map label for this gene is cycH

Identifier: 52841100

GI number: 52841100

Start: 938166

End: 938897

Strand: Direct

Name: cycH

Synonym: lpg0864

Alternate gene names: 52841100

Gene position: 938166-938897 (Clockwise)

Preceding gene: 52841099

Following gene: 52841101

Centisome position: 27.61

GC content: 40.85

Gene sequence:

>732_bases
TTGGCTTTATTATTTTTTGGCGGACATGTTTTAAGCGAAATTCTCATGAATGAATGGTGGTTAGTTATTTTATTGGTTGT
TTTAGCCGTTTTTGCATGCACTCTTATTACCTATCCTTTGCGGCGCAATCGTTTGGTAAGTTTGTTGCTCGCCCCCATTA
TTTTTATAATGGTTTTTACAGGGTACTATTTTTGGGGAGATTTTGCTCGGTGGCAAGAATATCTACATCGAAATGAGGCT
CAGGAGCTAGCGCAATCGATGCTAAAATCGATTAAAAGCCCTCAGGAATTAATCGACAAGCTGAAGGCCAAGTTGGATGC
GCAGCCTGAAAGTGCCAAGGGTTGGTATTTGTTAGGCAGATTATACAGCAGTCAAAAGGATAACCAAAATGCTTCCCTCG
CTTTTGCAAAAGCCCACCAGCTTAAACCTGAAGACGAGCAATTTGCAGTCAATTATGCCCACAGTTTATGGCAATTGAGT
AATCAACAGTTCAATCCTGATATTTTAGAAATTTTTCATACCTTATTAAAAAATAACCCCAGGCAACCGGATGCTTTAGC
CATGCTTGCGATGCATGCTTACTTAAGTCATGATTATGAAGCTGCGATTAATTACTGGCAACGACTACTCCAGTTGGCGC
CAGCGCAGTCCGAAGAAGCATTGGCTATTCGCAAGGCAATAGCAAAAGCTGAGCAACAAATTAATAGAGGGGGAAAGAAA
AGTGACAGATAA

Upstream 100 bases:

>100_bases
GATTATCTAACCGCACGTTATGGGGATTTTATACTATTTAAACCGCCTGTTAAGAGCGTGACTCTTTTATTGTGGTTTGG
CCCATTCCTGTTTTTATTGA

Downstream 100 bases:

>100_bases
AGTTTACCAAATCGTGGAGTTAATTGGGACCTCGCAGGAAGGAATTGAAAAAGCAATTGATAATGCAATAAAGCAAGTGG
CTAAAACGCATGGGAAATTG

Product: cytochrome c type biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MALLFFGGHVLSEILMNEWWLVILLVVLAVFACTLITYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYLHRNEA
QELAQSMLKSIKSPQELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLS
NQQFNPDILEIFHTLLKNNPRQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEQQINRGGKK
SDR

Sequences:

>Translated_243_residues
MALLFFGGHVLSEILMNEWWLVILLVVLAVFACTLITYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYLHRNEA
QELAQSMLKSIKSPQELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLS
NQQFNPDILEIFHTLLKNNPRQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEQQINRGGKK
SDR
>Mature_242_residues
ALLFFGGHVLSEILMNEWWLVILLVVLAVFACTLITYPLRRNRLVSLLLAPIIFIMVFTGYYFWGDFARWQEYLHRNEAQ
ELAQSMLKSIKSPQELIDKLKAKLDAQPESAKGWYLLGRLYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLSN
QQFNPDILEIFHTLLKNNPRQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEQQINRGGKKS
DR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=135, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790513, Length=166, Percent_Identity=26.5060240963855, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28034; Mature: 27903

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure 
ALLFFGGHVLSEILMNEWWLVILLVVLAVFACTLITYPLRRNRLVSLLLAPIIFIMVFT
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYYFWGDFARWQEYLHRNEAQELAQSMLKSIKSPQELIDKLKAKLDAQPESAKGWYLLGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
LYSSQKDNQNASLAFAKAHQLKPEDEQFAVNYAHSLWQLSNQQFNPDILEIFHTLLKNNP
HHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
RQPDALAMLAMHAYLSHDYEAAINYWQRLLQLAPAQSEEALAIRKAIAKAEQQINRGGKK
CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
SDR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]