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The map label for this gene is aidB [H]

Identifier: 52841039

GI number: 52841039

Start: 878744

End: 880447

Strand: Reverse

Name: aidB [H]

Synonym: lpg0803

Alternate gene names: 52841039

Gene position: 880447-878744 (Counterclockwise)

Preceding gene: 52841040

Following gene: 52841037

Centisome position: 25.91

GC content: 39.5

Gene sequence:

>1704_bases
ATGAGCATAAAAAATGAATATGAAACAGCAAGAGACCATTTCAGGTTATGGGACAAACAACTCAAAGACAATATACTGCT
CGAAAAGTCTTGTTTAATGCACACTTACAAAACTTATTTTCCCGATGAGCCTGGTTTTATTCAACAATTGAGTCAATTTT
CCAAAGCAGTAGCTGAAGAATTAGAACCAACCGTTATGGAAAATAACCTGGATGCCAACTTGCCTAAAATAGAACAATAC
AATGCAATTGGTCAGCGCGATGATCGGGTAATCCACCATCCTGCCTATGTTCGATCCGGCGATATTATTTATGGATCCAA
TCTCATGCAATACTTGCTAAAGCCAGGGCAAATGAAAAAAACGTTGAGCCTGTTTCTGCTCTCATCGCATGCCGGGGAGG
CAGGACACAACTGCCCTATTGCCTGTTCTGCAGGAGTAATACGTGTTTTAAGTCGTTATTCCCAATTAGAGAAAACCTCA
TATTATCTCGATAAACTCACTCACCCTTCTTTCAGTTACAATTTTACTGGAGCCCAATTTTTAACTGAAATTCAAGGTGG
TTCTGACGTTGGCACCAATGCGACCCGTGCCAATCTGGATAAGCAAAATCAATGGCGCATTTCAGGTGAAAAATGGTTTT
GCTCCAACGCTAATGCCGATTTAATTTTAATGACAGCTCGTTTCGACGAGGAAACTCCCGGAACCAAAGGATTGGGTTTG
TTTTTAGTGCCCGGTCGCCTGGATGATGGCAGCCCTAATCACTATTATCTTCGTCGATTAAAACAGAAAATTGGTACCCG
CACCATGGCAACCGCAGAAATAGATTTTGAAGGGGCACTAGCCTACCCTATGGGTGATGTGGCGGAAGGAATACATTTGG
TTATGGAAAATGTGTTGCATTTATCAAGGATATTCAATTCCTTCTCAGTCTTGGGTATGTCTCGTCGCGCCTATCAGATT
GCTTGCTATTATGCTAAAAACCGCCGAGCATTTAACCATCCTATTATTGAGTATCCTCTGGTAAAAGAAAGTTTGGCTAA
AATAAAATCAGAAAATCTGGCTATGTTAGCCAGCGTGTTTCATATGGCTCGTTGTCAGGATGAATTAGATGCTCTTCCAG
AGCCTCAACAAACCAAATCACAACAACTCTTATTACGTACACTGGCGAATATCAACAAGTACTTTACAGCCAAACGTTCC
GTGGACAATATACATCATTGTCTCGATTTATTGGCAGGAAATGGCACCATAGAGAACTTTTCTTCATTACCAAGACTATT
AAGAGACTGTATCGTTTGCGAAAATTGGGAGGGGACGCATTTTACATTATGGATGCAAACCCTAAGAGATATGCATAAAT
TTGCAATTGATGAATTATTCATTGCCCATTTGCAACAACTTCTGGAACAAGTTCAGGATATCAACCCTCATAAAGCATTG
TTTTTCGGAAAGATAAATGAGTTAGATACAACAATAAAAACAATGAAATCAGCCAATCATGAGGAGCAAAGTCTGCATAT
AAAAACAATCATTGAACATATGGCCTCGTTGCTTGCTGCTTTATGTCTGGCTATAGAGATACAACAAGGCCAGTCGCCAG
AAACAAAACAAGCTGGATTAACTTTATTTATTCATGAACATATGGCAAGTTGTTTACTTCAACACGACGACTATATGAAA
ATACTAAATAAAATAATTGGATAG

Upstream 100 bases:

>100_bases
TAATAACCACTATTACAATTTATTGAAAAATATTTAAGTACACCAAGAACTTAAAAAACTGTGATATCAATGCATCTATT
AATTACCAAAGGATGGGGTA

Downstream 100 bases:

>100_bases
TTCACTCTGCAAATGCATTAACCAGCAGGCCGGGAAAAATTATTCGTAGTGTCAAACCAAAAAAATAGATTTTAAGTTTA
GCAAATTGAATTACATATAA

Product: acyl CoA dehydrogenase, short chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 566

Protein sequence:

>567_residues
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQY
NAIGQRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTS
YYLDKLTHPSFSYNFTGAQFLTEIQGGSDVGTNATRANLDKQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
FLVPGRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQI
ACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRS
VDNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
FFGKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFIHEHMASCLLQHDDYMK
ILNKIIG

Sequences:

>Translated_567_residues
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQY
NAIGQRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTS
YYLDKLTHPSFSYNFTGAQFLTEIQGGSDVGTNATRANLDKQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
FLVPGRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQI
ACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRS
VDNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
FFGKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFIHEHMASCLLQHDDYMK
ILNKIIG
>Mature_566_residues
SIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEELEPTVMENNLDANLPKIEQYN
AIGQRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKKTLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSY
YLDKLTHPSFSYNFTGAQFLTEIQGGSDVGTNATRANLDKQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGLF
LVPGRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLHLSRIFNSFSVLGMSRRAYQIA
CYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVFHMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSV
DNIHHCLDLLAGNGTIENFSSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKALF
FGKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGLTLFIHEHMASCLLQHDDYMKI
LNKIIG

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI87082384, Length=421, Percent_Identity=29.6912114014252, Blast_Score=155, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI86563383, Length=419, Percent_Identity=30.0715990453461, Blast_Score=169, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI86563381, Length=419, Percent_Identity=30.0715990453461, Blast_Score=169, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI17538396, Length=300, Percent_Identity=27, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356377, Length=263, Percent_Identity=25.4752851711027, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 64534; Mature: 64403

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LEPTVMENNLDANLPKIEQYNAIGQRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKK
CCCHHHCCCCCCCCCCHHHHHCCCCCCCCEEECCCEEECCCEEECCHHHHHHHCCCHHHH
TLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSYYLDKLTHPSFSYNFTGAQF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LTEIQGGSDVGTNATRANLDKQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
HHHHCCCCCCCCCCHHCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCEE
FLVPGRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLH
EEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
LSRIFNSFSVLGMSRRAYQIACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVF
HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSVDNIHHCLDLLAGNGTIENF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
FFGKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGL
EEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCE
TLFIHEHMASCLLQHDDYMKILNKIIG
EEEHHHHHHHHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
SIKNEYETARDHFRLWDKQLKDNILLEKSCLMHTYKTYFPDEPGFIQQLSQFSKAVAEE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LEPTVMENNLDANLPKIEQYNAIGQRDDRVIHHPAYVRSGDIIYGSNLMQYLLKPGQMKK
CCCHHHCCCCCCCCCCHHHHHCCCCCCCCEEECCCEEECCCEEECCHHHHHHHCCCHHHH
TLSLFLLSSHAGEAGHNCPIACSAGVIRVLSRYSQLEKTSYYLDKLTHPSFSYNFTGAQF
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LTEIQGGSDVGTNATRANLDKQNQWRISGEKWFCSNANADLILMTARFDEETPGTKGLGL
HHHHCCCCCCCCCCHHCCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCEE
FLVPGRLDDGSPNHYYLRRLKQKIGTRTMATAEIDFEGALAYPMGDVAEGIHLVMENVLH
EEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
LSRIFNSFSVLGMSRRAYQIACYYAKNRRAFNHPIIEYPLVKESLAKIKSENLAMLASVF
HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HMARCQDELDALPEPQQTKSQQLLLRTLANINKYFTAKRSVDNIHHCLDLLAGNGTIENF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SSLPRLLRDCIVCENWEGTHFTLWMQTLRDMHKFAIDELFIAHLQQLLEQVQDINPHKAL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
FFGKINELDTTIKTMKSANHEEQSLHIKTIIEHMASLLAALCLAIEIQQGQSPETKQAGL
EEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCE
TLFIHEHMASCLLQHDDYMKILNKIIG
EEEHHHHHHHHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]