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The map label for this gene is ssb

Identifier: 52840601

GI number: 52840601

Start: 396429

End: 396917

Strand: Reverse

Name: ssb

Synonym: lpg0356

Alternate gene names: 52840601

Gene position: 396917-396429 (Counterclockwise)

Preceding gene: 52840602

Following gene: 52840578

Centisome position: 11.68

GC content: 39.47

Gene sequence:

>489_bases
ATGATTTCAATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCC
TAACGGAAATGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGACAAAACGACAGGTGAAAAACAAGATA
GAACTGAATGGCACAGAGTAGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGAGAATACATTCGCAAAGGTTCCAAGCTA
TATGTCGAAGGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTC
TGACATTCAAATGCTCGATAGCAAAGGAAGTAGTGCCACTAATTACGACGACATGCCTTCATTTCAGGGAACCTCTACCC
CTCAACAAGCTTCAACAAAAAATCAAGCAACTCCAACATCTACTGCACAAGATGCTTTTGATGAATTAGATGATGACATA
CCGTTTTAA

Upstream 100 bases:

>100_bases
TTCATCAGTCTACAATTTACCAATAACACCTTCTCTTTGGGCTGCTACGAAATAACCGCCAAATTATGTATAATACCTAA
CTAACTTTCGCATACAGGAG

Downstream 100 bases:

>100_bases
ATGATTCAAATAAAAGCCCGCGTTAATGCGGGCTCAAAATATACATTAATAGTTATTAATCTAAAATTTACTCTTCCGTA
TCATCACTGCTTACAGGTCT

Product: single strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MISMARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKL
YVEGSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDI
PF

Sequences:

>Translated_162_residues
MISMARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKL
YVEGSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDI
PF
>Mature_162_residues
MISMARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKL
YVEGSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDI
PF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=117, Percent_Identity=34.1880341880342, Blast_Score=78, Evalue=3e-15,
Organism=Escherichia coli, GI1790494, Length=180, Percent_Identity=46.6666666666667, Blast_Score=166, Evalue=6e-43,
Organism=Drosophila melanogaster, GI85725234, Length=103, Percent_Identity=38.8349514563107, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24647376, Length=103, Percent_Identity=38.8349514563107, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 17975; Mature: 17975

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISMARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRV
CCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
VCFNRLGEIAGEYIRKGSKLYVEGSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSAT
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
NYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MISMARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRV
CCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH
VCFNRLGEIAGEYIRKGSKLYVEGSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSAT
HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
NYDDMPSFQGTSTPQQASTKNQATPTSTAQDAFDELDDDIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]