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The map label for this gene is rbcR [H]

Identifier: 52840535

GI number: 52840535

Start: 333622

End: 334503

Strand: Reverse

Name: rbcR [H]

Synonym: lpg0280

Alternate gene names: 52840535

Gene position: 334503-333622 (Counterclockwise)

Preceding gene: 52840536

Following gene: 52840534

Centisome position: 9.84

GC content: 39.68

Gene sequence:

>882_bases
ATGGATATTAGAGACATCAAATCCTTTCTCGCCGTCGTCGAATACCATTCTCTCACCTTGGCAGCTAAAAAATTGCATGT
CACTCAATCAGCTATGAGCAAACGCATTCGAAAAATAGAGGACGAGTTAAATGTACGTTTGATAATTAGCGAGGGTTCCA
AATTAATTTTTACCGAAACAGCCAAGCAGCTTATTCCTTATGCCAGGCAAATGCTTTCCGCACATCAAAATATGGTTCAC
ACCCTGAAAAACTCGCAACAATTCACGCAAAGCATCATCATAGGGGCTTCCGTGTATGTGTCTCACTACGTATTGCCAGG
CTTTTTTAAATACTTAAAGGAAACCCATCCGACCATTCAAGCGCATCTGAAAACCATTAGTGAAAAGGAAGTCGAGTATA
TTCTGAACCACGGCACGGTTGATCTGGTAATCTGCCCGGCACGGGAAGTATCTGAAAAATTATTGGGCAATTGTTTGCTC
TGGGAGGAAAAACTGAATTTGGTTGTAGCAGCAAATCATGAGCTTGCCCATAGAACATCCGAGCTTTCACTCTCAGAACT
TTCAGAGTACCCGGCCATCTTAACTGAGAAAGGAGCAGCATTGCGTGACAAGCTTGATACCCTATTTGAAAAAAATCAAC
TGGTACTAATCCTGGGTTTTGAAATGAGTACTATCGATGCCATAAAATCTCTAGTAGAGTACGGTTTAGGCTGGAGCTAT
CTGCCTGATAGTTTACTGTCAGAAAAATTAAAAATCTTAAAAATAAAAGACCTTGAACTAACAATCTCATTTCATGCTTT
TTATCTGAAAAAAAGAATCAGTGACCGCTTGATTAATGACCTGCTAAGCAACTTTAAAAAATGGCAAAATCGCGATAATT
AA

Upstream 100 bases:

>100_bases
CCCTCGCCCCCTGCTTAGAACATTATACTCATCTGCCGTCCTTGTTTAGAAAGCGCTTAGTGCCGCTATGCTATACTTCT
TATAAAAAGGCAAGCATTCT

Downstream 100 bases:

>100_bases
CAGGAATGAATCTTTTATGAAAATAATTGGCTTTATCACAAAAAACATTCGGGTTCATATAACAGATTTTTATCACTAAT
ATTGCAATAGACAGAACCTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTETAKQLIPYARQMLSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQAHLKTISEKEVEYILNHGTVDLVICPAREVSEKLLGNCLL
WEEKLNLVVAANHELAHRTSELSLSELSEYPAILTEKGAALRDKLDTLFEKNQLVLILGFEMSTIDAIKSLVEYGLGWSY
LPDSLLSEKLKILKIKDLELTISFHAFYLKKRISDRLINDLLSNFKKWQNRDN

Sequences:

>Translated_293_residues
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTETAKQLIPYARQMLSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQAHLKTISEKEVEYILNHGTVDLVICPAREVSEKLLGNCLL
WEEKLNLVVAANHELAHRTSELSLSELSEYPAILTEKGAALRDKLDTLFEKNQLVLILGFEMSTIDAIKSLVEYGLGWSY
LPDSLLSEKLKILKIKDLELTISFHAFYLKKRISDRLINDLLSNFKKWQNRDN
>Mature_293_residues
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTETAKQLIPYARQMLSAHQNMVH
TLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQAHLKTISEKEVEYILNHGTVDLVICPAREVSEKLLGNCLL
WEEKLNLVVAANHELAHRTSELSLSELSEYPAILTEKGAALRDKLDTLFEKNQLVLILGFEMSTIDAIKSLVEYGLGWSY
LPDSLLSEKLKILKIKDLELTISFHAFYLKKRISDRLINDLLSNFKKWQNRDN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=28.6290322580645, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=25.9259259259259, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=248, Percent_Identity=29.0322580645161, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790208, Length=300, Percent_Identity=24, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=249, Percent_Identity=25.3012048192771, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=23.7354085603113, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787879, Length=258, Percent_Identity=23.2558139534884, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=252, Percent_Identity=24.2063492063492, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081904, Length=256, Percent_Identity=24.21875, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082132, Length=261, Percent_Identity=20.6896551724138, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33567; Mature: 33567

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50931 HTH_LYSR ; PS01191 RIBOSOMAL_S3AE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTET
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEHHH
AKQLIPYARQMLSAHQNMVHTLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AHLKTISEKEVEYILNHGTVDLVICPAREVSEKLLGNCLLWEEKLNLVVAANHELAHRTS
HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHEEHHHCCEEEEECCHHHHHHH
ELSLSELSEYPAILTEKGAALRDKLDTLFEKNQLVLILGFEMSTIDAIKSLVEYGLGWSY
HCCHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
LPDSLLSEKLKILKIKDLELTISFHAFYLKKRISDRLINDLLSNFKKWQNRDN
CCHHHHHHHHHHEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDIRDIKSFLAVVEYHSLTLAAKKLHVTQSAMSKRIRKIEDELNVRLIISEGSKLIFTET
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEHHH
AKQLIPYARQMLSAHQNMVHTLKNSQQFTQSIIIGASVYVSHYVLPGFFKYLKETHPTIQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AHLKTISEKEVEYILNHGTVDLVICPAREVSEKLLGNCLLWEEKLNLVVAANHELAHRTS
HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHEEHHHCCEEEEECCHHHHHHH
ELSLSELSEYPAILTEKGAALRDKLDTLFEKNQLVLILGFEMSTIDAIKSLVEYGLGWSY
HCCHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
LPDSLLSEKLKILKIKDLELTISFHAFYLKKRISDRLINDLLSNFKKWQNRDN
CCHHHHHHHHHHEEEECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]