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The map label for this gene is yxaC [H]

Identifier: 52840468

GI number: 52840468

Start: 246607

End: 247314

Strand: Reverse

Name: yxaC [H]

Synonym: lpg0213

Alternate gene names: 52840468

Gene position: 247314-246607 (Counterclockwise)

Preceding gene: 52840469

Following gene: 52840467

Centisome position: 7.28

GC content: 44.35

Gene sequence:

>708_bases
ATGCCAAGCAGCATTCTCTCTGAATCCATGATCCAGGCATTTTTCTGGTCACTTATCACAATAGGTATGTATTTTATTAC
GCAAAAACTATATAGAAGATGGCCCTTTTGGTGGCTAATGCCACTTGCTTTAACACCGATACTGGTTGCCAGCGTAGTGC
TTTTACTGCATGTAAACTACCAGGACTATTTCCGAGGAACAAAATGGCTAGTCTTGTTAATTGGTCCTGCAACCGTGGCC
TTTGCCATTCCCATTTATGAAAAACGTGCCCTCATTCGCCAGCATTGGCCAGTGCTTTTAATTGGCGTGATTGTGGGAAG
TTTCACTGCCATAGCATCCAGTTGGGGATTGGCAATCCTTCTTGGCCTTGATGATAATTTACGCTTAAGTCTTCTCCCTC
GCTCTATCAGCACACCGTTTGCTATAGAAATCTCAAGGGGAATTGGTGCAGCACCTGATTTGACTGCGATTTTTGTTATT
GTCACAGGGATATTGGGAGCTATACTCGGTGAATTCATCCTGTCGCGCTTGCCTTTTAACTCAGCTCTTGCCAGAGGTGC
CCTTTTAGGAGTAGGAGCCCATGCGGCAGGAACCGCTCAGGCCCATAAAATAGGGAATACGGAAGGCGCCATTGCCAGTT
TGGCTATGATTTTAGTAGGTCTATTCAATATACTACTTCTCCCACTTATCAGTTATCTTTTGAAATAA

Upstream 100 bases:

>100_bases
TTAGGCCTTAAAATTCTCTTCATTATTCTGCTCAGCACAATCACGGTGATGCTAGTCACTGCCCTTGTTGTAGATTATTG
CTACCGTTGGAGGACGCATC

Downstream 100 bases:

>100_bases
AAGTGCGTTTAGTAGAAATTAAAAGGAACTCCTCTAGTTAAGAAAAAATCATAAGCATGTTATTTTATGGTTTTTCCATC
AATAGAAGAAAATAATGACT

Product: inner membrane protein, LrgB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPSSILSESMIQAFFWSLITIGMYFITQKLYRRWPFWWLMPLALTPILVASVVLLLHVNYQDYFRGTKWLVLLIGPATVA
FAIPIYEKRALIRQHWPVLLIGVIVGSFTAIASSWGLAILLGLDDNLRLSLLPRSISTPFAIEISRGIGAAPDLTAIFVI
VTGILGAILGEFILSRLPFNSALARGALLGVGAHAAGTAQAHKIGNTEGAIASLAMILVGLFNILLLPLISYLLK

Sequences:

>Translated_235_residues
MPSSILSESMIQAFFWSLITIGMYFITQKLYRRWPFWWLMPLALTPILVASVVLLLHVNYQDYFRGTKWLVLLIGPATVA
FAIPIYEKRALIRQHWPVLLIGVIVGSFTAIASSWGLAILLGLDDNLRLSLLPRSISTPFAIEISRGIGAAPDLTAIFVI
VTGILGAILGEFILSRLPFNSALARGALLGVGAHAAGTAQAHKIGNTEGAIASLAMILVGLFNILLLPLISYLLK
>Mature_234_residues
PSSILSESMIQAFFWSLITIGMYFITQKLYRRWPFWWLMPLALTPILVASVVLLLHVNYQDYFRGTKWLVLLIGPATVAF
AIPIYEKRALIRQHWPVLLIGVIVGSFTAIASSWGLAILLGLDDNLRLSLLPRSISTPFAIEISRGIGAAPDLTAIFVIV
TGILGAILGEFILSRLPFNSALARGALLGVGAHAAGTAQAHKIGNTEGAIASLAMILVGLFNILLLPLISYLLK

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=222, Percent_Identity=34.2342342342342, Blast_Score=141, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 25578; Mature: 25447

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSILSESMIQAFFWSLITIGMYFITQKLYRRWPFWWLMPLALTPILVASVVLLLHVNY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCH
QDYFRGTKWLVLLIGPATVAFAIPIYEKRALIRQHWPVLLIGVIVGSFTAIASSWGLAIL
HHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEE
LGLDDNLRLSLLPRSISTPFAIEISRGIGAAPDLTAIFVIVTGILGAILGEFILSRLPFN
EECCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SALARGALLGVGAHAAGTAQAHKIGNTEGAIASLAMILVGLFNILLLPLISYLLK
HHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
PSSILSESMIQAFFWSLITIGMYFITQKLYRRWPFWWLMPLALTPILVASVVLLLHVNY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCH
QDYFRGTKWLVLLIGPATVAFAIPIYEKRALIRQHWPVLLIGVIVGSFTAIASSWGLAIL
HHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEE
LGLDDNLRLSLLPRSISTPFAIEISRGIGAAPDLTAIFVIVTGILGAILGEFILSRLPFN
EECCCCCEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SALARGALLGVGAHAAGTAQAHKIGNTEGAIASLAMILVGLFNILLLPLISYLLK
HHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377; 10568751 [H]