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The map label for this gene is oxyR

Identifier: 52840428

GI number: 52840428

Start: 202064

End: 202924

Strand: Reverse

Name: oxyR

Synonym: lpg0173

Alternate gene names: 52840428

Gene position: 202924-202064 (Counterclockwise)

Preceding gene: 52840435

Following gene: 52840426

Centisome position: 5.97

GC content: 37.4

Gene sequence:

>861_bases
ATGTCTTTGTTGTTGGATGATATAAAGTATTTCATAGCGGCCAGCGATACGCTCAATATGACAAGAGCTTCTGAAATTAT
TGGAATATCTCAACCTGCGCTTAGTTATTCTATAAAGAGATTGGAGAACAAACTTGGTGGATTACTATTTATCAGGCTTA
AAAACGGAATCCAGCTTACAAAACTTGGAGAGGAGTTTAAGAGGCGCTCCCACCGTCTATTATATGAATGGGAGCAGGTG
CAAAACATAGCTAACCCTGAATCAGGTTTTGTTCAGGGAAACTATACTATAGCCCTTCACCCTTCTGTTGCGCTTTATAC
TCTCCAGTACTTTATGCCAAAACTGCAAGTGAACTATCCTGGGCTTGGCATTAATTTCATTCATGGTCATTCAAGAGAGA
TGACTGAAAAAGTGATAAGTTGGGAAGCCGATTTTGGTATTGTTGTGAATCCCATACAACACCCTGATCTCGTTATAATA
AAGCTGTCTACGGATGAAGTGACAGTCTTTTATGCCAATGATGCGCAAAATAAACTGATTTATGATAGAAAACTTGCCCA
ATCACAATACATCCTTAAAAAAATTGGCAAAAAAATAACTTTCAATGGCGTAATTAATTCTACCAGCCTTGAAGTGGTAG
CCAAACTCACAGCCTTAGGTCTTGGGTATGGCATTCTACCTACCAGGGTCACCTATCCCTATAAACACCTCAAAAAAGTA
CTCAATGCGCCTGTGTTTAGAGATGAGATTTGTCTTGTCTACCGACCTGAAAAACATAATAATCCTGTCAGTAAAAAAAT
CATTCAAATTATCAGATCATCCATAAGCAATGATAATGATAAAGAAAATTATTTTGATTAA

Upstream 100 bases:

>100_bases
TCCTGAAAAAGAGAGTACAGATCTTCGACAAATAATTAAAATGATTTATTTTAATTATTGTGATAAATTTTACTTATACC
TAAAGTGAAGTTGGTGAGTC

Downstream 100 bases:

>100_bases
TTCAGCTATTACAATGATTTTTGCTTATTTTTTGAGGTAATAGAATTTATTGCAAAAAATATAAAACACCGAAATTGATT
GATAATAGACCATTATTTTT

Product: transcriptional regulator, LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSLLLDDIKYFIAASDTLNMTRASEIIGISQPALSYSIKRLENKLGGLLFIRLKNGIQLTKLGEEFKRRSHRLLYEWEQV
QNIANPESGFVQGNYTIALHPSVALYTLQYFMPKLQVNYPGLGINFIHGHSREMTEKVISWEADFGIVVNPIQHPDLVII
KLSTDEVTVFYANDAQNKLIYDRKLAQSQYILKKIGKKITFNGVINSTSLEVVAKLTALGLGYGILPTRVTYPYKHLKKV
LNAPVFRDEICLVYRPEKHNNPVSKKIIQIIRSSISNDNDKENYFD

Sequences:

>Translated_286_residues
MSLLLDDIKYFIAASDTLNMTRASEIIGISQPALSYSIKRLENKLGGLLFIRLKNGIQLTKLGEEFKRRSHRLLYEWEQV
QNIANPESGFVQGNYTIALHPSVALYTLQYFMPKLQVNYPGLGINFIHGHSREMTEKVISWEADFGIVVNPIQHPDLVII
KLSTDEVTVFYANDAQNKLIYDRKLAQSQYILKKIGKKITFNGVINSTSLEVVAKLTALGLGYGILPTRVTYPYKHLKKV
LNAPVFRDEICLVYRPEKHNNPVSKKIIQIIRSSISNDNDKENYFD
>Mature_285_residues
SLLLDDIKYFIAASDTLNMTRASEIIGISQPALSYSIKRLENKLGGLLFIRLKNGIQLTKLGEEFKRRSHRLLYEWEQVQ
NIANPESGFVQGNYTIALHPSVALYTLQYFMPKLQVNYPGLGINFIHGHSREMTEKVISWEADFGIVVNPIQHPDLVIIK
LSTDEVTVFYANDAQNKLIYDRKLAQSQYILKKIGKKITFNGVINSTSLEVVAKLTALGLGYGILPTRVTYPYKHLKKVL
NAPVFRDEICLVYRPEKHNNPVSKKIIQIIRSSISNDNDKENYFD

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=272, Percent_Identity=25.3676470588235, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=22.0338983050847, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788887, Length=187, Percent_Identity=28.8770053475936, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693105, Length=299, Percent_Identity=22.742474916388, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790208, Length=241, Percent_Identity=22.8215767634855, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787601, Length=143, Percent_Identity=26.5734265734266, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788297, Length=144, Percent_Identity=28.4722222222222, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=248, Percent_Identity=23.3870967741935, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32620; Mature: 32489

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLLDDIKYFIAASDTLNMTRASEIIGISQPALSYSIKRLENKLGGLLFIRLKNGIQLT
CCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEE
KLGEEFKRRSHRLLYEWEQVQNIANPESGFVQGNYTIALHPSVALYTLQYFMPKLQVNYP
HHHHHHHHHHHHHEEEHHHHHHCCCCCCCEEECCEEEEECCCHHHHHHHHHCCCEEECCC
GLGINFIHGHSREMTEKVISWEADFGIVVNPIQHPDLVIIKLSTDEVTVFYANDAQNKLI
CCEEEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCEEEEEEECCCCCCEE
YDRKLAQSQYILKKIGKKITFNGVINSTSLEVVAKLTALGLGYGILPTRVTYPYKHLKKV
HHHHHHHHHHHHHHHCCEEEEECEECCHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHH
LNAPVFRDEICLVYRPEKHNNPVSKKIIQIIRSSISNDNDKENYFD
HCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SLLLDDIKYFIAASDTLNMTRASEIIGISQPALSYSIKRLENKLGGLLFIRLKNGIQLT
CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCEEEE
KLGEEFKRRSHRLLYEWEQVQNIANPESGFVQGNYTIALHPSVALYTLQYFMPKLQVNYP
HHHHHHHHHHHHHEEEHHHHHHCCCCCCCEEECCEEEEECCCHHHHHHHHHCCCEEECCC
GLGINFIHGHSREMTEKVISWEADFGIVVNPIQHPDLVIIKLSTDEVTVFYANDAQNKLI
CCEEEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCEEEEEEECCCCCCEE
YDRKLAQSQYILKKIGKKITFNGVINSTSLEVVAKLTALGLGYGILPTRVTYPYKHLKKV
HHHHHHHHHHHHHHHCCEEEEECEECCHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHH
LNAPVFRDEICLVYRPEKHNNPVSKKIIQIIRSSISNDNDKENYFD
HCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]