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The map label for this gene is arcR [H]

Identifier: 52787844

GI number: 52787844

Start: 3994607

End: 3995284

Strand: Direct

Name: arcR [H]

Synonym: BLi04167

Alternate gene names: 52787844

Gene position: 3994607-3995284 (Clockwise)

Preceding gene: 52787843

Following gene: 52787854

Centisome position: 94.6

GC content: 44.84

Gene sequence:

>678_bases
ATGAAGAACAAAGACATCGTACATCAGCTGAAAAAGTTTCCTCTTCTCGCTTCCCTGAATAAAAGAGATCTGGAAGATAT
GAAACAGTTTATCTATTGGCGCTCTTACCATAAAGGCCAGATATTATTTATGGAAGACGACCCCCGGGAACGAATGTACC
TTCTTCTCGACGGCTTTATCAAACTCGAAAAATCAAACGAAGCCGGATCCATGTTTTATACCGACTATGTACGTCCTCAT
ACCCTCTTTCCATTTGGAGGCTTGTTTCGGGATGAGCATTATCACTATGCCGCCGAAGCCTTAACAGATATTGAACTCTA
CTATATACCCATGAACATCTTCGAAGATCTCGTCCGGGACAACAAAAACCTGCTTTACGATATTCTCAATCATTTATCAG
ACATCCTTGCCCTTCACGAGGAAAGGCTGAAGCGCATCACACTCTCCCATGCCCACGACAGGGTTACACAAGCCATTTAT
TATTTAACCGAAAGCCTCGGTCAAAAAGAAAGCAACTCAACCGTCATCAACTGTCCGATCACCGCTGCCGAAATCGCCAA
AATCTCGGGGACATCCCGCGAAACCGTCAGCGCCGTCCTGAAAAAGCTCCGCTGCGAAGGCGTTATCAGTCAAATGAACA
AGCAGATCATGATCAATCGGCCGGAATATTTTATGTAG

Upstream 100 bases:

>100_bases
GAAGGGCTCAGGGAGGGTTCTTCCTTTTGCCAATCGTCAAAAACAAGTAAAATTTAAAGTATATAGCCGCAACATAAGAA
AATCGATAAGGGTGGTCCAT

Downstream 100 bases:

>100_bases
GCATATATGAGAAATCATCCCGGCGACAAGCGGGATGATTCCCCGCCGTTTTTATTTATACCGGAATTCCTCTGTTTCAA
ACCGTCTGTTTTTGATGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKNKDIVHQLKKFPLLASLNKRDLEDMKQFIYWRSYHKGQILFMEDDPRERMYLLLDGFIKLEKSNEAGSMFYTDYVRPH
TLFPFGGLFRDEHYHYAAEALTDIELYYIPMNIFEDLVRDNKNLLYDILNHLSDILALHEERLKRITLSHAHDRVTQAIY
YLTESLGQKESNSTVINCPITAAEIAKISGTSRETVSAVLKKLRCEGVISQMNKQIMINRPEYFM

Sequences:

>Translated_225_residues
MKNKDIVHQLKKFPLLASLNKRDLEDMKQFIYWRSYHKGQILFMEDDPRERMYLLLDGFIKLEKSNEAGSMFYTDYVRPH
TLFPFGGLFRDEHYHYAAEALTDIELYYIPMNIFEDLVRDNKNLLYDILNHLSDILALHEERLKRITLSHAHDRVTQAIY
YLTESLGQKESNSTVINCPITAAEIAKISGTSRETVSAVLKKLRCEGVISQMNKQIMINRPEYFM
>Mature_225_residues
MKNKDIVHQLKKFPLLASLNKRDLEDMKQFIYWRSYHKGQILFMEDDPRERMYLLLDGFIKLEKSNEAGSMFYTDYVRPH
TLFPFGGLFRDEHYHYAAEALTDIELYYIPMNIFEDLVRDNKNLLYDILNHLSDILALHEERLKRITLSHAHDRVTQAIY
YLTESLGQKESNSTVINCPITAAEIAKISGTSRETVSAVLKKLRCEGVISQMNKQIMINRPEYFM

Specific function: Positively regulates the expression of the arcABDCR operon under anaerobic conditions, thus playing an essential role in arginine catabolism. May also control the expression of genes encoding proteins which are involved in anaerobic metabolism. Can bind c

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR014710
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding [H]

EC number: NA

Molecular weight: Translated: 26476; Mature: 26476

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKDIVHQLKKFPLLASLNKRDLEDMKQFIYWRSYHKGQILFMEDDPRERMYLLLDGFI
CCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHE
KLEKSNEAGSMFYTDYVRPHTLFPFGGLFRDEHYHYAAEALTDIELYYIPMNIFEDLVRD
EEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECHHHHHHHHHC
NKNLLYDILNHLSDILALHEERLKRITLSHAHDRVTQAIYYLTESLGQKESNSTVINCPI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
TAAEIAKISGTSRETVSAVLKKLRCEGVISQMNKQIMINRPEYFM
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
>Mature Secondary Structure
MKNKDIVHQLKKFPLLASLNKRDLEDMKQFIYWRSYHKGQILFMEDDPRERMYLLLDGFI
CCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHE
KLEKSNEAGSMFYTDYVRPHTLFPFGGLFRDEHYHYAAEALTDIELYYIPMNIFEDLVRD
EEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECHHHHHHHHHC
NKNLLYDILNHLSDILALHEERLKRITLSHAHDRVTQAIYYLTESLGQKESNSTVINCPI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
TAAEIAKISGTSRETVSAVLKKLRCEGVISQMNKQIMINRPEYFM
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA