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The map label for this gene is ywbD [H]

Identifier: 52787737

GI number: 52787737

Start: 3884169

End: 3885359

Strand: Reverse

Name: ywbD [H]

Synonym: BLi04060

Alternate gene names: 52787737

Gene position: 3885359-3884169 (Counterclockwise)

Preceding gene: 52787739

Following gene: 52787736

Centisome position: 92.01

GC content: 45.0

Gene sequence:

>1191_bases
ATGCATACATTAAAAATAAAACATCCATTCGCTGCAAAAATGAAAAAGGGCTATCCCCTAATCGAAAAAGAGGCCGTTTC
TTCGCAAGAAAACGGCATAAAAGAAGGATCGCTGATCAGGATAACCGATGAAAACGGCAGGTTTTTAGGAAAGGGCTATT
ATGGCGAGCAAAACAAAGGGATCGGCTGGATTCTGACTCGAAACGAGGGGGAATCGATTGACCAGTCATTCTTTTTAAGC
AGGCTGGCGAAAGCATTTCAAGCCAGAAAATCGCTTTTTCAAGACCCGGATACGACCGCTTTTCGTTTGTTTAACGGGGA
AGGCGACGGAATCGGCGGCTTTACGATTGACTATTATGACGGCTACTATTTGTTCCAATGGTACAGCAAAGGGATTTATA
CGCTTAAAGAAACGATTATGGAAGCCCTTGATGAATTGACGGATTATAAAGCTGTTTATGAGAAAAAACGGTTTAATACG
GCCGGGCAGTATGTGGAAGATGACGACTTTGTCAAAGGCGAAAGAGGAGACTTTCCGATCATTGTGAAAGAGAACGGCAT
TCATTTTGCCGTTTACCTCAATGACGGAGCGATGACCGGCGTTTTTCTCGATCAGCGCCATGTCCGCAAGGCGGTTAGGG
ACCGGTATGCGGAAGGGAAAACCGCGCTCAACACATTCTCATATACCGGCGCATTTTCTGTGGCGGCGGCGCTCGGAGGC
GCTGAAAAAACGACGAGCGTTGATGTTGCAAACCGCAGCTTAAGCAGGACGATCGAACAATTCAGTGTGAACGGGCTGGA
CTATGAAGCTCATGAGATTAAAGTCATGGACGTTTTTAAATATTTTCAATACGCGGCCAAAAAAGAACTCGCCTTTGACC
TTGTCATCCTTGATCCCCCTTCATTTGCGAGAACGAAAAAGCATACATTCAGCGCGGCAAAGGATTACAAAAATCTGTTA
AAAGACGCGATTCGAATCACTAAAGATCAAGGTGTGATCGTCGCTTCGACGAACAGCAGCGCATTTGGAATGAAAAAATT
CAAAGGCTTTATCGAAGAGGCATGCAAAGAAACGGGGACGCGCTTTACAGTGCTTGAGGAGCATTCGCTTCCCGAAGATT
TTAAAACGGTGAAAAGCTATCCTGAGGGCGATTATTTAAAAGTTGTCTTTTTACAGGTTCGCCATCGTTAA

Upstream 100 bases:

>100_bases
CGGAATCATCTGTCAATTATATCGATTACATGATGAATAAGAACATCTATCAGGCGTTATGGTAGGATAGAGAAGACTTT
AAGATAAGGACTGAATTAAA

Downstream 100 bases:

>100_bases
TGTAAGGCTGGAGAAAAAATTTGCGATAAAAACAATACCTGTCGGTCAATTATTCATGTATATTGATATTACGCAAATCA
CACAGGCAGGGGGAAGCTAT

Product: YwbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MHTLKIKHPFAAKMKKGYPLIEKEAVSSQENGIKEGSLIRITDENGRFLGKGYYGEQNKGIGWILTRNEGESIDQSFFLS
RLAKAFQARKSLFQDPDTTAFRLFNGEGDGIGGFTIDYYDGYYLFQWYSKGIYTLKETIMEALDELTDYKAVYEKKRFNT
AGQYVEDDDFVKGERGDFPIIVKENGIHFAVYLNDGAMTGVFLDQRHVRKAVRDRYAEGKTALNTFSYTGAFSVAAALGG
AEKTTSVDVANRSLSRTIEQFSVNGLDYEAHEIKVMDVFKYFQYAAKKELAFDLVILDPPSFARTKKHTFSAAKDYKNLL
KDAIRITKDQGVIVASTNSSAFGMKKFKGFIEEACKETGTRFTVLEEHSLPEDFKTVKSYPEGDYLKVVFLQVRHR

Sequences:

>Translated_396_residues
MHTLKIKHPFAAKMKKGYPLIEKEAVSSQENGIKEGSLIRITDENGRFLGKGYYGEQNKGIGWILTRNEGESIDQSFFLS
RLAKAFQARKSLFQDPDTTAFRLFNGEGDGIGGFTIDYYDGYYLFQWYSKGIYTLKETIMEALDELTDYKAVYEKKRFNT
AGQYVEDDDFVKGERGDFPIIVKENGIHFAVYLNDGAMTGVFLDQRHVRKAVRDRYAEGKTALNTFSYTGAFSVAAALGG
AEKTTSVDVANRSLSRTIEQFSVNGLDYEAHEIKVMDVFKYFQYAAKKELAFDLVILDPPSFARTKKHTFSAAKDYKNLL
KDAIRITKDQGVIVASTNSSAFGMKKFKGFIEEACKETGTRFTVLEEHSLPEDFKTVKSYPEGDYLKVVFLQVRHR
>Mature_396_residues
MHTLKIKHPFAAKMKKGYPLIEKEAVSSQENGIKEGSLIRITDENGRFLGKGYYGEQNKGIGWILTRNEGESIDQSFFLS
RLAKAFQARKSLFQDPDTTAFRLFNGEGDGIGGFTIDYYDGYYLFQWYSKGIYTLKETIMEALDELTDYKAVYEKKRFNT
AGQYVEDDDFVKGERGDFPIIVKENGIHFAVYLNDGAMTGVFLDQRHVRKAVRDRYAEGKTALNTFSYTGAFSVAAALGG
AEKTTSVDVANRSLSRTIEQFSVNGLDYEAHEIKVMDVFKYFQYAAKKELAFDLVILDPPSFARTKKHTFSAAKDYKNLL
KDAIRITKDQGVIVASTNSSAFGMKKFKGFIEEACKETGTRFTVLEEHSLPEDFKTVKSYPEGDYLKVVFLQVRHR

Specific function: Unknown

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=374, Percent_Identity=31.0160427807487, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI1787181, Length=204, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: NA

Molecular weight: Translated: 44897; Mature: 44897

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTLKIKHPFAAKMKKGYPLIEKEAVSSQENGIKEGSLIRITDENGRFLGKGYYGEQNKG
CCEEEECCCHHHHHHCCCCCHHHHHHCHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCC
IGWILTRNEGESIDQSFFLSRLAKAFQARKSLFQDPDTTAFRLFNGEGDGIGGFTIDYYD
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEC
GYYLFQWYSKGIYTLKETIMEALDELTDYKAVYEKKRFNTAGQYVEDDDFVKGERGDFPI
CEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
IVKENGIHFAVYLNDGAMTGVFLDQRHVRKAVRDRYAEGKTALNTFSYTGAFSVAAALGG
EEECCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHEECCCHHHHHHHHCC
AEKTTSVDVANRSLSRTIEQFSVNGLDYEAHEIKVMDVFKYFQYAAKKELAFDLVILDPP
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHHHCCEEEEEEECCC
SFARTKKHTFSAAKDYKNLLKDAIRITKDQGVIVASTNSSAFGMKKFKGFIEEACKETGT
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
RFTVLEEHSLPEDFKTVKSYPEGDYLKVVFLQVRHR
EEEEEECCCCCHHHHHHHCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MHTLKIKHPFAAKMKKGYPLIEKEAVSSQENGIKEGSLIRITDENGRFLGKGYYGEQNKG
CCEEEECCCHHHHHHCCCCCHHHHHHCHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCC
IGWILTRNEGESIDQSFFLSRLAKAFQARKSLFQDPDTTAFRLFNGEGDGIGGFTIDYYD
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEC
GYYLFQWYSKGIYTLKETIMEALDELTDYKAVYEKKRFNTAGQYVEDDDFVKGERGDFPI
CEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
IVKENGIHFAVYLNDGAMTGVFLDQRHVRKAVRDRYAEGKTALNTFSYTGAFSVAAALGG
EEECCCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHCCCCHHHHHEECCCHHHHHHHHCC
AEKTTSVDVANRSLSRTIEQFSVNGLDYEAHEIKVMDVFKYFQYAAKKELAFDLVILDPP
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHHHCCEEEEEEECCC
SFARTKKHTFSAAKDYKNLLKDAIRITKDQGVIVASTNSSAFGMKKFKGFIEEACKETGT
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
RFTVLEEHSLPEDFKTVKSYPEGDYLKVVFLQVRHR
EEEEEECCCCCHHHHHHHCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]