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The map label for this gene is ywdJ [H]

Identifier: 52787686

GI number: 52787686

Start: 3832039

End: 3833340

Strand: Reverse

Name: ywdJ [H]

Synonym: BLi04009

Alternate gene names: 52787686

Gene position: 3833340-3832039 (Counterclockwise)

Preceding gene: 52787687

Following gene: 52787685

Centisome position: 90.78

GC content: 50.15

Gene sequence:

>1302_bases
TTGAAACTGCTTTTTGGGGCTTTACAATGGACGGCATTTATTATTGCGTCCGCAATCGTGGTGCCCATTGCAATCGGGCA
GTCATTCGGGCTGAACCAGGGAGAGACCGCGGGGTTGGTTCAAAGCACTTTTTTCGTGCTCGGCACAACGGCTTTTATCC
AATGTTTATTGGGACACCGCCTGCCGATTAATGAGAGTCCGGCTGGCCTCTGGTGGGGCGTCTACACGATTTATGCCGGT
CTTACAGGGACCGTATTCGCGACTCACATCGAAACGCTCCAGGGGCTGCAGGGAGCGATGCTGCTAAGCGCGGTTTTCTT
CTTTATTTTTAGTTTATTTAAAGTCATTGATAAGCTGGCTGTGATGTTTACTCCTGTTGTGACAGGCATTTATTTACTGC
TGCTGGTCATCCAGCTTAGCGATCCGATCGTTAAAGGTGTCATGGGGATCGGCTACCGGAAAAACGAGGTCGATATACCC
GTGTTTTTGCTGGCGGTTGTGATTATGCTGGCTACGTTTCTGATGAGCCGGTCAAACGTTCCGATTCTCAAGCAATATTC
AATTTTAATTGCGCTTTTCGGCGGCTGGATCTTATTTGCCGTATTCGGCGTGGCGAAGGCGCCCGAGCGTGCGAACCAGC
TGTTCCACCTTCCGGATATTTTTCCTTTCGGCATGCCGATGTTTGACAGCGGGCTGGTTGTTACTTCGTTGTTCATTACA
GTTTTGTTAATCGTCAATATGCTCGCAAGCATACGGGTGGTTGAAGGAGCAGTCAAACAGTTTGAGAAGCTGGAAGAGAG
GAAGCGGGCCCGTCCGGCCGGGTTTATCGCCTCTGTCAGCCATTTGCTGAGCGGACTGCTCGGAGCTGTAGGGACCGTGC
CGATATCCGGAGCTGCAGGGTTTATTCAAACGACGAGGATGTCTTCCAAAAAACCGTTTTTGCTCGGGAGTCTGATCGTA
ATCGTCATCAGCTTCTTCCCGCTGGTCATGAATACTTTTGCCAGCCTGCCGTCTCCGGTCGGTTTTGCGGTGAACTTCGT
CGTGTTTTCAACGATGGTCGGCCTGGCATTTGCCGAATTCGATTCTTATGAAAAGGACGAGGCCGGCCGCATCCGCTTTG
TTACCGGGATTGCGCTCCTTGCCGGTGTGGGGGTTATGTTTGTACCTGAGAGTGCTTTGGAAGGGATGCATCCTGTTTTT
GTTTCCATTTTAAGCAATGGGCTTGTCCTTGGAACAATCGTAGCGATTGCTGCGGAACAAATACAGCTTAGGAAAAAGAA
ATATGACAATATCGTGTCATGA

Upstream 100 bases:

>100_bases
AAAACAAGAGAAACAAAAGCATGAAGATGACGGCAACGGAGATTCTATTTTTGATTTCTAGGCGCCGTCCGTCTGTTTTA
AAAAAGAGAGGTTGATCAAC

Downstream 100 bases:

>100_bases
GATTTGCATAAGTTGAAATTCATGACATGTACGCTATGATGATAAAGGAAAGGCGGGCGATTTGATCGTGAAATTATTTT
TGATTTTAGGTGCTGTCAAT

Product: YwdJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MKLLFGALQWTAFIIASAIVVPIAIGQSFGLNQGETAGLVQSTFFVLGTTAFIQCLLGHRLPINESPAGLWWGVYTIYAG
LTGTVFATHIETLQGLQGAMLLSAVFFFIFSLFKVIDKLAVMFTPVVTGIYLLLLVIQLSDPIVKGVMGIGYRKNEVDIP
VFLLAVVIMLATFLMSRSNVPILKQYSILIALFGGWILFAVFGVAKAPERANQLFHLPDIFPFGMPMFDSGLVVTSLFIT
VLLIVNMLASIRVVEGAVKQFEKLEERKRARPAGFIASVSHLLSGLLGAVGTVPISGAAGFIQTTRMSSKKPFLLGSLIV
IVISFFPLVMNTFASLPSPVGFAVNFVVFSTMVGLAFAEFDSYEKDEAGRIRFVTGIALLAGVGVMFVPESALEGMHPVF
VSILSNGLVLGTIVAIAAEQIQLRKKKYDNIVS

Sequences:

>Translated_433_residues
MKLLFGALQWTAFIIASAIVVPIAIGQSFGLNQGETAGLVQSTFFVLGTTAFIQCLLGHRLPINESPAGLWWGVYTIYAG
LTGTVFATHIETLQGLQGAMLLSAVFFFIFSLFKVIDKLAVMFTPVVTGIYLLLLVIQLSDPIVKGVMGIGYRKNEVDIP
VFLLAVVIMLATFLMSRSNVPILKQYSILIALFGGWILFAVFGVAKAPERANQLFHLPDIFPFGMPMFDSGLVVTSLFIT
VLLIVNMLASIRVVEGAVKQFEKLEERKRARPAGFIASVSHLLSGLLGAVGTVPISGAAGFIQTTRMSSKKPFLLGSLIV
IVISFFPLVMNTFASLPSPVGFAVNFVVFSTMVGLAFAEFDSYEKDEAGRIRFVTGIALLAGVGVMFVPESALEGMHPVF
VSILSNGLVLGTIVAIAAEQIQLRKKKYDNIVS
>Mature_433_residues
MKLLFGALQWTAFIIASAIVVPIAIGQSFGLNQGETAGLVQSTFFVLGTTAFIQCLLGHRLPINESPAGLWWGVYTIYAG
LTGTVFATHIETLQGLQGAMLLSAVFFFIFSLFKVIDKLAVMFTPVVTGIYLLLLVIQLSDPIVKGVMGIGYRKNEVDIP
VFLLAVVIMLATFLMSRSNVPILKQYSILIALFGGWILFAVFGVAKAPERANQLFHLPDIFPFGMPMFDSGLVVTSLFIT
VLLIVNMLASIRVVEGAVKQFEKLEERKRARPAGFIASVSHLLSGLLGAVGTVPISGAAGFIQTTRMSSKKPFLLGSLIV
IVISFFPLVMNTFASLPSPVGFAVNFVVFSTMVGLAFAEFDSYEKDEAGRIRFVTGIALLAGVGVMFVPESALEGMHPVF
VSILSNGLVLGTIVAIAAEQIQLRKKKYDNIVS

Specific function: Unknown

COG id: COG2233

COG function: function code F; Xanthine/uracil permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081750, Length=428, Percent_Identity=25.4672897196262, Blast_Score=113, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006042
- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46715; Mature: 46715

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS01116 XANTH_URACIL_PERMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCC
>Mature Secondary Structure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HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]