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The map label for this gene is 52787569

Identifier: 52787569

GI number: 52787569

Start: 3711923

End: 3712528

Strand: Reverse

Name: 52787569

Synonym: BLi03891

Alternate gene names: NA

Gene position: 3712528-3711923 (Counterclockwise)

Preceding gene: 52787570

Following gene: 52787568

Centisome position: 87.92

GC content: 48.51

Gene sequence:

>606_bases
ATGAATGAATTAGAACAGCAAGCGCTGATGAAGTATTGCCTGAGAATGACAGGCGATAAATGGGATGCCGAGGATTTAGT
CCAGGATACAATCCTCAAGTTAATGGAAATCAATCGAACAGACGCGTCACATGCTTATCAAAAGACGGTTGCAAAGCATA
AATGGATTGACCTGCTCAGAAAAAGGAAGCGCGAAAGCTTTCTGTCTGAAGATAATCTGGAAGACGGGCGGGCAGAGCGC
ATGAAGGCGGCCGATGACTTCGAGCACCTGCTGAAACAGCTTTCCGGTATTTTAACACCGAAGCAATTAACGATTTTTCT
GCTCAAAGATGTGTTTTCCTTTCAGCTGCACGAAATCGCCGAGACGCTCGGTAAGCCCGAATCATCCGTCAAGTCGCTTT
TATTTAGATCGCGTCAGCGATTAAAAAGGCTTTCTCCGGAGGTTCTGCAAAAGGAGCCGGCGGACGGGGATGACGAACAC
ATCGGTCTGCTTGTTCGGGCGATATTGCATCACAACCCCGATGATCTGCTCGAATTTGCCAAACAGACATGGCGTTTCGA
CGCTTCACAGCCGTCTTGCATCAGCATGATGAGGTGCGCTGCCTAG

Upstream 100 bases:

>100_bases
GGCGCCTTTTTTGTTACAATCATAAAAAAACCCGTATCAAATCGGCGGAGCCAGCCGTTTATTAAGTAAGAGGCCTCTTT
TAAGGAGTGTGAATGCATTC

Downstream 100 bases:

>100_bases
GAGGAAAAATGCTATGAACACCATTCCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCA
GACTTTTAAAAGACCGGATC

Product: hypothetical protein

Products: NA

Alternate protein names: RNA Polymerase Factor Sigma-; RNA Polymerase Sigma-24 Subunit ECF Subfamily; DNA-Directed RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Ecf-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNELEQQALMKYCLRMTGDKWDAEDLVQDTILKLMEINRTDASHAYQKTVAKHKWIDLLRKRKRESFLSEDNLEDGRAER
MKAADDFEHLLKQLSGILTPKQLTIFLLKDVFSFQLHEIAETLGKPESSVKSLLFRSRQRLKRLSPEVLQKEPADGDDEH
IGLLVRAILHHNPDDLLEFAKQTWRFDASQPSCISMMRCAA

Sequences:

>Translated_201_residues
MNELEQQALMKYCLRMTGDKWDAEDLVQDTILKLMEINRTDASHAYQKTVAKHKWIDLLRKRKRESFLSEDNLEDGRAER
MKAADDFEHLLKQLSGILTPKQLTIFLLKDVFSFQLHEIAETLGKPESSVKSLLFRSRQRLKRLSPEVLQKEPADGDDEH
IGLLVRAILHHNPDDLLEFAKQTWRFDASQPSCISMMRCAA
>Mature_201_residues
MNELEQQALMKYCLRMTGDKWDAEDLVQDTILKLMEINRTDASHAYQKTVAKHKWIDLLRKRKRESFLSEDNLEDGRAER
MKAADDFEHLLKQLSGILTPKQLTIFLLKDVFSFQLHEIAETLGKPESSVKSLLFRSRQRLKRLSPEVLQKEPADGDDEH
IGLLVRAILHHNPDDLLEFAKQTWRFDASQPSCISMMRCAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23349; Mature: 23349

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELEQQALMKYCLRMTGDKWDAEDLVQDTILKLMEINRTDASHAYQKTVAKHKWIDLLR
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KRKRESFLSEDNLEDGRAERMKAADDFEHLLKQLSGILTPKQLTIFLLKDVFSFQLHEIA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ETLGKPESSVKSLLFRSRQRLKRLSPEVLQKEPADGDDEHIGLLVRAILHHNPDDLLEFA
HHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
KQTWRFDASQPSCISMMRCAA
HHHHCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MNELEQQALMKYCLRMTGDKWDAEDLVQDTILKLMEINRTDASHAYQKTVAKHKWIDLLR
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
KRKRESFLSEDNLEDGRAERMKAADDFEHLLKQLSGILTPKQLTIFLLKDVFSFQLHEIA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ETLGKPESSVKSLLFRSRQRLKRLSPEVLQKEPADGDDEHIGLLVRAILHHNPDDLLEFA
HHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
KQTWRFDASQPSCISMMRCAA
HHHHCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA