Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 52787524

GI number: 52787524

Start: 3672157

End: 3673119

Strand: Direct

Name: rbsC [H]

Synonym: BLi03844

Alternate gene names: 52787524

Gene position: 3672157-3673119 (Clockwise)

Preceding gene: 52787523

Following gene: 52787525

Centisome position: 86.96

GC content: 50.99

Gene sequence:

>963_bases
ATGAAAACTCAACCGGCTGTGAAAAAAAGCCTTAATGTTGATTCTGTAATGCAAAAGCTCGGTCCGTTTCTCGGCCTGAT
CATTCTCGTCGTCATCGTATCATTGTTAAATCCGAGCTTTTTAGAACCGTTAAATATTTTAAACTTGTTAAGACAAGTCG
CCATTAATGCGCTGATCGCGTTTGGCATGACCTTTGTCATTTTAACCGGCGGCATCGATCTTTCCGTCGGAGCGATTTTG
GCGCTGTCAAGCGCATTGATCGCCGGAATGATCGCCGGCGGCATCGATCCTGTTTTCGCCGTCATCATCGGCTGCCTGAT
CGGAGCCCTGCTCGGCTTGGTCAACGGGCTGTTAATCACGAAAGGTAAAATGGCCCCGTTCATCGCAACACTTGCCACAA
TGACGATTTTCCGCGGATTGACGATGGTTTATACAGACGGCAATCCGATTACAGGGCTCGGCAACCACTACGGCTTCCAG
CTTTTCGGACGCGGTTACTTTTTAGGCATCCCCGTCCCTGCGATTACAATGGCAGCCGCCTTTATCATCCTCTGGGTGAT
CCTTCACAAAACGCCTTTCGGCCGCCGCACATATGCAATCGGCGGAAATGAAAAAGCGGCCTTGATCTCGGGCATTAAAG
TTCCGCGCGTCAAAATGATGATTTATTCTCTTGCAGGCCTATTATCCGCGTTGGCTGGAGCCATCTTGACGTCACGGCTA
AACTCAGCCCAGCCGACGGCAGGCACTTCCTATGAACTCGACGCCATAGCCGCAGTCGTATTAGGCGGCACAAGCCTTGC
CGGAGGAAGAGGACGAATTGCCGGCACACTCATCGGCGTCCTGATCATCGGAACGTTGAATAACGGCTTGAACCTGCTTG
GCGTCTCTTCCTTTTTCCAAATGGTCGTCAAAGGTGTCGTCATTTTGATCGCAGTCCTGCTGGACCGCAAGAAATCCGCT
TAA

Upstream 100 bases:

>100_bases
CGCGTCCTTGTAATCCATGAAGGAACGCTAAGCGGAGAGCTATCAAGAAATGATGCCACGCAAGAACGAATTATGACACT
CGCTACAGGAGGACGGTAAC

Downstream 100 bases:

>100_bases
GGAGGGCTATACTGATGAAAAAAACATTAACGGTTTTCACCGCATTGGCGCTTCTGTTTCTGTCCGCCTGCTCGCTGGAG
CCGCCGGAATGGGCAAAGCC

Product: RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKTQPAVKKSLNVDSVMQKLGPFLGLIILVVIVSLLNPSFLEPLNILNLLRQVAINALIAFGMTFVILTGGIDLSVGAIL
ALSSALIAGMIAGGIDPVFAVIIGCLIGALLGLVNGLLITKGKMAPFIATLATMTIFRGLTMVYTDGNPITGLGNHYGFQ
LFGRGYFLGIPVPAITMAAAFIILWVILHKTPFGRRTYAIGGNEKAALISGIKVPRVKMMIYSLAGLLSALAGAILTSRL
NSAQPTAGTSYELDAIAAVVLGGTSLAGGRGRIAGTLIGVLIIGTLNNGLNLLGVSSFFQMVVKGVVILIAVLLDRKKSA

Sequences:

>Translated_320_residues
MKTQPAVKKSLNVDSVMQKLGPFLGLIILVVIVSLLNPSFLEPLNILNLLRQVAINALIAFGMTFVILTGGIDLSVGAIL
ALSSALIAGMIAGGIDPVFAVIIGCLIGALLGLVNGLLITKGKMAPFIATLATMTIFRGLTMVYTDGNPITGLGNHYGFQ
LFGRGYFLGIPVPAITMAAAFIILWVILHKTPFGRRTYAIGGNEKAALISGIKVPRVKMMIYSLAGLLSALAGAILTSRL
NSAQPTAGTSYELDAIAAVVLGGTSLAGGRGRIAGTLIGVLIIGTLNNGLNLLGVSSFFQMVVKGVVILIAVLLDRKKSA
>Mature_320_residues
MKTQPAVKKSLNVDSVMQKLGPFLGLIILVVIVSLLNPSFLEPLNILNLLRQVAINALIAFGMTFVILTGGIDLSVGAIL
ALSSALIAGMIAGGIDPVFAVIIGCLIGALLGLVNGLLITKGKMAPFIATLATMTIFRGLTMVYTDGNPITGLGNHYGFQ
LFGRGYFLGIPVPAITMAAAFIILWVILHKTPFGRRTYAIGGNEKAALISGIKVPRVKMMIYSLAGLLSALAGAILTSRL
NSAQPTAGTSYELDAIAAVVLGGTSLAGGRGRIAGTLIGVLIIGTLNNGLNLLGVSSFFQMVVKGVVILIAVLLDRKKSA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=52.0249221183801, Blast_Score=299, Evalue=1e-82,
Organism=Escherichia coli, GI1790524, Length=318, Percent_Identity=41.8238993710692, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=40.1273885350318, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1788896, Length=303, Percent_Identity=39.9339933993399, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1789992, Length=347, Percent_Identity=36.5994236311239, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=38.0239520958084, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI87082395, Length=290, Percent_Identity=36.2068965517241, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=39.84375, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787794, Length=299, Percent_Identity=35.4515050167224, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787793, Length=259, Percent_Identity=32.8185328185328, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33198; Mature: 33198

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQPAVKKSLNVDSVMQKLGPFLGLIILVVIVSLLNPSFLEPLNILNLLRQVAINALIA
CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHH
FGMTFVILTGGIDLSVGAILALSSALIAGMIAGGIDPVFAVIIGCLIGALLGLVNGLLIT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
KGKMAPFIATLATMTIFRGLTMVYTDGNPITGLGNHYGFQLFGRGYFLGIPVPAITMAAA
CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHH
FIILWVILHKTPFGRRTYAIGGNEKAALISGIKVPRVKMMIYSLAGLLSALAGAILTSRL
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
NSAQPTAGTSYELDAIAAVVLGGTSLAGGRGRIAGTLIGVLIIGTLNNGLNLLGVSSFFQ
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
MVVKGVVILIAVLLDRKKSA
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTQPAVKKSLNVDSVMQKLGPFLGLIILVVIVSLLNPSFLEPLNILNLLRQVAINALIA
CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHH
FGMTFVILTGGIDLSVGAILALSSALIAGMIAGGIDPVFAVIIGCLIGALLGLVNGLLIT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
KGKMAPFIATLATMTIFRGLTMVYTDGNPITGLGNHYGFQLFGRGYFLGIPVPAITMAAA
CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCEEEEECCHHHHHHHHH
FIILWVILHKTPFGRRTYAIGGNEKAALISGIKVPRVKMMIYSLAGLLSALAGAILTSRL
HHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
NSAQPTAGTSYELDAIAAVVLGGTSLAGGRGRIAGTLIGVLIIGTLNNGLNLLGVSSFFQ
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
MVVKGVVILIAVLLDRKKSA
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]