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The map label for this gene is yvbY

Identifier: 52787357

GI number: 52787357

Start: 3499562

End: 3500284

Strand: Reverse

Name: yvbY

Synonym: BLi03673

Alternate gene names: 52787357

Gene position: 3500284-3499562 (Counterclockwise)

Preceding gene: 52787358

Following gene: 52787356

Centisome position: 82.89

GC content: 52.97

Gene sequence:

>723_bases
ATGACAAACGGAACAATCCACAACAAAGACGGCTTTTTAAACCGGATTGCTGAAAGGCTCGGCCGCAACAGGCGTTCTGC
AGGCGTCACCGTTCCCGATTATATCCACCAGCCGCAGCACAGGGTATATCAAGGCTATACACAGGATGAGCTTGTCGGCG
TCTTAAAGGACCACTGCCGGAAAATTCACACGGAGCTGATTGAAACAGATGTCATCGGCTTGCATGATGCCTTGTATGAA
CAAGCAGCGCGATTTGGAGGCGGGCCTGTCATGATCCCGAAAGATGACCGTTTTAAAGAGTACGGACTGTCAGGCCTGTT
AACGGACAAGTGGCCGAATGAAGGGACGAAAGTGTGGGAATGGGATGCAGCGGCCGGAGATGAGAACATCCAGCGAGCCG
AACAGGCTAACATCGGCGTGACATTCAGCGAGATCACGCTTGCTGAATCCGGAACGGTCGTCCTCTTCAGCTCAAAAGAC
AAAGGACGTTCCGTCAGCTTGCTGCCGACGACATATATCGCGATCGTCCCGAAAAGCACCATCGTCCCGCGGATGACACA
AGCAAGCGCAATCATCAAACAAAAGATTGCAGACGGCGACGTCATCCCGTCCTGCATCAACTATGTCACTGGACCGAGCA
ATTCAGCCGATATCGAAATGGACCTTGTAGTCGGCGTCCACGGCCCCGTAAAGGCGGCATATATAGTCGTGGAGGACCGG
TAA

Upstream 100 bases:

>100_bases
CGTTAAAACAGTGGACCCAGATACGCGACTTCCCCGCGCCGAACAAGTCAAGGTTCCGCGACTGGTTTGAGGACAGACGG
AAAGAGAAGGGGGAAGACAA

Downstream 100 bases:

>100_bases
TTATCGATAGCAAAAAGATTAGCTTCATACTGAGCTAATCTTTTTTATTATGCGATATGACAATTCCGGCGCATACAGAT
TGAACGCATCGTTCTGCTTT

Product: YvbY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTNGTIHNKDGFLNRIAERLGRNRRSAGVTVPDYIHQPQHRVYQGYTQDELVGVLKDHCRKIHTELIETDVIGLHDALYE
QAARFGGGPVMIPKDDRFKEYGLSGLLTDKWPNEGTKVWEWDAAAGDENIQRAEQANIGVTFSEITLAESGTVVLFSSKD
KGRSVSLLPTTYIAIVPKSTIVPRMTQASAIIKQKIADGDVIPSCINYVTGPSNSADIEMDLVVGVHGPVKAAYIVVEDR

Sequences:

>Translated_240_residues
MTNGTIHNKDGFLNRIAERLGRNRRSAGVTVPDYIHQPQHRVYQGYTQDELVGVLKDHCRKIHTELIETDVIGLHDALYE
QAARFGGGPVMIPKDDRFKEYGLSGLLTDKWPNEGTKVWEWDAAAGDENIQRAEQANIGVTFSEITLAESGTVVLFSSKD
KGRSVSLLPTTYIAIVPKSTIVPRMTQASAIIKQKIADGDVIPSCINYVTGPSNSADIEMDLVVGVHGPVKAAYIVVEDR
>Mature_239_residues
TNGTIHNKDGFLNRIAERLGRNRRSAGVTVPDYIHQPQHRVYQGYTQDELVGVLKDHCRKIHTELIETDVIGLHDALYEQ
AARFGGGPVMIPKDDRFKEYGLSGLLTDKWPNEGTKVWEWDAAAGDENIQRAEQANIGVTFSEITLAESGTVVLFSSKDK
GRSVSLLPTTYIAIVPKSTIVPRMTQASAIIKQKIADGDVIPSCINYVTGPSNSADIEMDLVVGVHGPVKAAYIVVEDR

Specific function: Is involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source

COG id: COG1556

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lutC/ykgG family

Homologues:

Organism=Escherichia coli, GI87081718, Length=238, Percent_Identity=38.655462184874, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LUTC_BACLD (Q65EM1)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_080760.1
- RefSeq:   YP_093186.1
- ProteinModelPortal:   Q65EM1
- STRING:   Q65EM1
- EnsemblBacteria:   EBBACT00000056962
- EnsemblBacteria:   EBBACT00000062393
- GeneID:   3029353
- GeneID:   3100660
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03673
- KEGG:   bli:BL03458
- NMPDR:   fig|279010.5.peg.2323
- eggNOG:   COG1556
- GeneTree:   EBGT00050000002605
- HOGENOM:   HBG729575
- OMA:   HTELIET
- ProtClustDB:   CLSK887897
- BioCyc:   BLIC279010-1:BLI03673-MONOMER
- BioCyc:   BLIC279010:BL03458-MONOMER
- HAMAP:   MF_02104
- InterPro:   IPR003741
- InterPro:   IPR002698
- InterPro:   IPR022823
- Gene3D:   G3DSA:3.40.50.10420

Pfam domain/function: PF02589 DUF162

EC number: NA

Molecular weight: Translated: 26387; Mature: 26256

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNGTIHNKDGFLNRIAERLGRNRRSAGVTVPDYIHQPQHRVYQGYTQDELVGVLKDHCR
CCCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHCCCCHHHHHHHHHHHHH
KIHTELIETDVIGLHDALYEQAARFGGGPVMIPKDDRFKEYGLSGLLTDKWPNEGTKVWE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHCCCCEECCCCCCCCCEEEE
WDAAAGDENIQRAEQANIGVTFSEITLAESGTVVLFSSKDKGRSVSLLPTTYIAIVPKST
ECCCCCCHHHHHHHHCCCCEEEHHEEEECCCEEEEEECCCCCCEEEEECEEEEEEECCCC
IVPRMTQASAIIKQKIADGDVIPSCINYVTGPSNSADIEMDLVVGVHGPVKAAYIVVEDR
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure 
TNGTIHNKDGFLNRIAERLGRNRRSAGVTVPDYIHQPQHRVYQGYTQDELVGVLKDHCR
CCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHCCCCHHHHHHHHHHHHH
KIHTELIETDVIGLHDALYEQAARFGGGPVMIPKDDRFKEYGLSGLLTDKWPNEGTKVWE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHCCCCEECCCCCCCCCEEEE
WDAAAGDENIQRAEQANIGVTFSEITLAESGTVVLFSSKDKGRSVSLLPTTYIAIVPKST
ECCCCCCHHHHHHHHCCCCEEEHHEEEECCCEEEEEECCCCCCEEEEECEEEEEEECCCC
IVPRMTQASAIIKQKIADGDVIPSCINYVTGPSNSADIEMDLVVGVHGPVKAAYIVVEDR
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA