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The map label for this gene is opuCB [H]

Identifier: 52787335

GI number: 52787335

Start: 3477171

End: 3477824

Strand: Reverse

Name: opuCB [H]

Synonym: BLi03650

Alternate gene names: 52787335

Gene position: 3477824-3477171 (Counterclockwise)

Preceding gene: 52787336

Following gene: 52787334

Centisome position: 82.36

GC content: 50.15

Gene sequence:

>654_bases
ATGAATCAGCTTGTCCAATTTCTTCAGCACAACGGCGGGGAAATGCTTTATAAAACATGGGAGCACTTATATATATCCAT
TTTCGCGGTTCTGCTCGGCATCATTTTCGCGGTTCCGCTCGGTGTCGTTTTAACGAGAATGAAAAAAGGAGCCGGCGTCG
TGATCGGCGTTGTCAACATCATTCAGACGCTGCCGAGTTTGGCGATCCTGGCGTTTTTTATCCCGCTTCTCGGAGTGGGA
AAGATTCCGGCGATTGTCGCGCTGTTTTTCTATTCAGTCCTACCGATTCTGAGAAACACTTACACGGGCGTAAAAGGCGT
CAATCAAAATTTGCTTGAGTCAGGAAAGGGAATCGGTATGACTGCATGGGAACAAATCCGCCTGGTCGAGCTGCCGCTAT
CGGTGCCGGTGATCATGGCAGGCATCCGGACGTCCACCGTTTACTTAATCGGCTGGGCGACGCTTTCGGCTTTTATCGGC
GGCGGCGGTCTCGGCGACTATATTTTTATCGGGCTCAACCTGTACCAGCCTGAGTACATTATCGCCGGAGCGGTGCCGGT
TACGATACTGGCCATCGTGATCGACTATATTCTGTCGAAAACCGAAGACAAAGTCACGCCTCAAGGATTAAAAGGGATGA
AGGAAGTATCATAA

Upstream 100 bases:

>100_bases
GATTGTCACAAGGGCAAACCTTGTCGATATCGTGTACGACTCGATTTGGGGAGATGAAGAAACCCTTGTTCAACGTTAAA
TGCAGGGAGGTGCATCAATC

Downstream 100 bases:

>100_bases
GGAGTTGGCTCTTATGCAAACAAAAAAACTGAGACGGCTCGGCGCCGTCATGCTGGTCCTCTCGCTTTTGATCAGCGGCT
GTGCGCTGCCGGGCCTTGGC

Product: OpuCB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNQLVQFLQHNGGEMLYKTWEHLYISIFAVLLGIIFAVPLGVVLTRMKKGAGVVIGVVNIIQTLPSLAILAFFIPLLGVG
KIPAIVALFFYSVLPILRNTYTGVKGVNQNLLESGKGIGMTAWEQIRLVELPLSVPVIMAGIRTSTVYLIGWATLSAFIG
GGGLGDYIFIGLNLYQPEYIIAGAVPVTILAIVIDYILSKTEDKVTPQGLKGMKEVS

Sequences:

>Translated_217_residues
MNQLVQFLQHNGGEMLYKTWEHLYISIFAVLLGIIFAVPLGVVLTRMKKGAGVVIGVVNIIQTLPSLAILAFFIPLLGVG
KIPAIVALFFYSVLPILRNTYTGVKGVNQNLLESGKGIGMTAWEQIRLVELPLSVPVIMAGIRTSTVYLIGWATLSAFIG
GGGLGDYIFIGLNLYQPEYIIAGAVPVTILAIVIDYILSKTEDKVTPQGLKGMKEVS
>Mature_217_residues
MNQLVQFLQHNGGEMLYKTWEHLYISIFAVLLGIIFAVPLGVVLTRMKKGAGVVIGVVNIIQTLPSLAILAFFIPLLGVG
KIPAIVALFFYSVLPILRNTYTGVKGVNQNLLESGKGIGMTAWEQIRLVELPLSVPVIMAGIRTSTVYLIGWATLSAFIG
GGGLGDYIFIGLNLYQPEYIIAGAVPVTILAIVIDYILSKTEDKVTPQGLKGMKEVS

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=181, Percent_Identity=36.4640883977901, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788451, Length=195, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=6e-24,
Organism=Escherichia coli, GI1789033, Length=164, Percent_Identity=28.6585365853659, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23434; Mature: 23434

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLVQFLQHNGGEMLYKTWEHLYISIFAVLLGIIFAVPLGVVLTRMKKGAGVVIGVVNI
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IQTLPSLAILAFFIPLLGVGKIPAIVALFFYSVLPILRNTYTGVKGVNQNLLESGKGIGM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
TAWEQIRLVELPLSVPVIMAGIRTSTVYLIGWATLSAFIGGGGLGDYIFIGLNLYQPEYI
HHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEE
IAGAVPVTILAIVIDYILSKTEDKVTPQGLKGMKEVS
EECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNQLVQFLQHNGGEMLYKTWEHLYISIFAVLLGIIFAVPLGVVLTRMKKGAGVVIGVVNI
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IQTLPSLAILAFFIPLLGVGKIPAIVALFFYSVLPILRNTYTGVKGVNQNLLESGKGIGM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
TAWEQIRLVELPLSVPVIMAGIRTSTVYLIGWATLSAFIGGGGLGDYIFIGLNLYQPEYI
HHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEE
IAGAVPVTILAIVIDYILSKTEDKVTPQGLKGMKEVS
EECHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]