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The map label for this gene is smpB

Identifier: 52787325

GI number: 52787325

Start: 3469638

End: 3470111

Strand: Reverse

Name: smpB

Synonym: BLi03640

Alternate gene names: 52787325

Gene position: 3470111-3469638 (Counterclockwise)

Preceding gene: 52787326

Following gene: 52787323

Centisome position: 82.18

GC content: 46.84

Gene sequence:

>474_bases
ATGCCAAAGGGAGAAGGGAAGGTTGTTTCCCAAAATAAAAAAGCAAATCACGATTATTTCATAGAAGAAACATACGAAAC
AGGCATCGTGCTTCAAGGAACGGAAATCAAGTCCATTCGCGCCGGTCGGGTGAATTTAAAGGACGCGTTTGCCAAAATTG
AACGCGGAGAAGTGTTCCTCCACAATATGCACATCAGCCCGTATGAGCAGGGGAACCGCTACAACCATGATCCGTTGCGA
ACGAGAAAGCTTTTGATGCACCGCAAGCAGATCAACAAATTGATCGGTTTGACGAAAGAGCAGGGATATTCGCTCGTACC
GCTCAAGATTTATTTGAAGAACGGCTTCGCAAAAGTGCTGCTCGGTCTCGGAAAAGGGAAGAAGAAGTTCGACAAACGCG
AAGACTTGAAGCGCAAAGACGCCAAACGCGAAATCGAAAGAGCGTTCCGCGACAGGCAAAAAGGCTTGATCTAA

Upstream 100 bases:

>100_bases
CAAAAAAAGGGCGGCGAAATTGTAAGACGAACGTTCATTTGATAGAATAATACGTATTCGCCGCCCTTTAGTGAGATTGA
AGGCGGGAGGAGGTTGCCGT

Downstream 100 bases:

>100_bases
AGCCAGAACTCATGTTATCCTATATGAACGTGATCACAGACATTACCATTTGGAATTGACGCGTGATCTTGTTATAATAG
TGATGCAGCCAGTGATCCGG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MPKGEGKVVSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDAFAKIERGEVFLHNMHISPYEQGNRYNHDPLR
TRKLLMHRKQINKLIGLTKEQGYSLVPLKIYLKNGFAKVLLGLGKGKKKFDKREDLKRKDAKREIERAFRDRQKGLI

Sequences:

>Translated_157_residues
MPKGEGKVVSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDAFAKIERGEVFLHNMHISPYEQGNRYNHDPLR
TRKLLMHRKQINKLIGLTKEQGYSLVPLKIYLKNGFAKVLLGLGKGKKKFDKREDLKRKDAKREIERAFRDRQKGLI
>Mature_156_residues
PKGEGKVVSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDAFAKIERGEVFLHNMHISPYEQGNRYNHDPLRT
RKLLMHRKQINKLIGLTKEQGYSLVPLKIYLKNGFAKVLLGLGKGKKKFDKREDLKRKDAKREIERAFRDRQKGLI

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=148, Percent_Identity=39.1891891891892, Blast_Score=129, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_BACLD (Q65EQ3)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_080732.1
- RefSeq:   YP_093154.1
- ProteinModelPortal:   Q65EQ3
- SMR:   Q65EQ3
- STRING:   Q65EQ3
- EnsemblBacteria:   EBBACT00000056112
- EnsemblBacteria:   EBBACT00000060619
- GeneID:   3029258
- GeneID:   3100577
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi03640
- KEGG:   bli:BL03484
- NMPDR:   fig|279010.5.peg.2291
- eggNOG:   COG0691
- GeneTree:   EBGT00050000002020
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   BLIC279010-1:BLI03640-MONOMER
- BioCyc:   BLIC279010:BL03484-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18263; Mature: 18131

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKGEGKVVSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDAFAKIERGEVFL
CCCCCCCEEECCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEE
HNMHISPYEQGNRYNHDPLRTRKLLMHRKQINKLIGLTKEQGYSLVPLKIYLKNGFAKVL
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEECCCHHHHH
LGLGKGKKKFDKREDLKRKDAKREIERAFRDRQKGLI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PKGEGKVVSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDAFAKIERGEVFL
CCCCCCEEECCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEE
HNMHISPYEQGNRYNHDPLRTRKLLMHRKQINKLIGLTKEQGYSLVPLKIYLKNGFAKVL
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEECCCHHHHH
LGLGKGKKKFDKREDLKRKDAKREIERAFRDRQKGLI
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA