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The map label for this gene is yvrI [H]

Identifier: 52787265

GI number: 52787265

Start: 3419608

End: 3420189

Strand: Reverse

Name: yvrI [H]

Synonym: BLi03577

Alternate gene names: 52787265

Gene position: 3420189-3419608 (Counterclockwise)

Preceding gene: 52787273

Following gene: 52787264

Centisome position: 81.0

GC content: 43.64

Gene sequence:

>582_bases
ATGATTGATCAAACGTTACTGCGTGCGAAAATCAAGGAGATCACAAGGCATCCGCTTGTGAAGCATTTTTTGAGCAACCC
AAGGTATGAGCGGCTTTTCAACCACGTGTTGGAACATCCGGATTCTGAAGAGGCAGAGTGTCTCGATCGTGAATTTAAGC
GATTTTACAAAAAAATCCGCATGATCAAATACATCAACTCGATGATCCGGATTTTCTCCGTCGACTTTGATAAAAGAGTC
CGGAAAAACCGAGAGCGTTTTCCATTGATGATCGACGACAGTCCGAATCTGCCCGAGCCGCCCCGAGGGGATCTGTTAGA
CGATGTCTTGGAACAGGAAGAGGAATTAAGCGAACACCTGCAAGACCCGATGCTTTATGAAGCGTTTTTGCAATTGACGG
ACAAGCAGAAAAAAGTGCTTGCACAAATTTATATTCATGGGGTATCCATGCAGGAAATTGCTGACTCTTTGGGAGAATCA
AGGCAAAATATTTCAAAAATTCATAAAAGGGCACTCGAAAAGATAAGAGAGCTGCTGAATTCTAAAGCAGAGGGGAATGA
TAACAGTGAGTCTGCACGATGA

Upstream 100 bases:

>100_bases
CTATTTTCTCTGAATGGGAACTTATGTTTGCATGTTAATAGAAGAGATGTGTTTACTTTTTTTTCATTTCTTTCATCTAA
ATAAATAGGAGGCGGTTTTT

Downstream 100 bases:

>100_bases
AAAAGAGATTGAGAAATTGCTGGAAAATTTCACACCGATGATCAAAAGCAAATTAGAGAGGGAGGATCTTGAACAGGAGC
TGAAGATGAAGATTTGCGAA

Product: YvrI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MIDQTLLRAKIKEITRHPLVKHFLSNPRYERLFNHVLEHPDSEEAECLDREFKRFYKKIRMIKYINSMIRIFSVDFDKRV
RKNRERFPLMIDDSPNLPEPPRGDLLDDVLEQEEELSEHLQDPMLYEAFLQLTDKQKKVLAQIYIHGVSMQEIADSLGES
RQNISKIHKRALEKIRELLNSKAEGNDNSESAR

Sequences:

>Translated_193_residues
MIDQTLLRAKIKEITRHPLVKHFLSNPRYERLFNHVLEHPDSEEAECLDREFKRFYKKIRMIKYINSMIRIFSVDFDKRV
RKNRERFPLMIDDSPNLPEPPRGDLLDDVLEQEEELSEHLQDPMLYEAFLQLTDKQKKVLAQIYIHGVSMQEIADSLGES
RQNISKIHKRALEKIRELLNSKAEGNDNSESAR
>Mature_193_residues
MIDQTLLRAKIKEITRHPLVKHFLSNPRYERLFNHVLEHPDSEEAECLDREFKRFYKKIRMIKYINSMIRIFSVDFDKRV
RKNRERFPLMIDDSPNLPEPPRGDLLDDVLEQEEELSEHLQDPMLYEAFLQLTDKQKKVLAQIYIHGVSMQEIADSLGES
RQNISKIHKRALEKIRELLNSKAEGNDNSESAR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Together with its coactivator rsoA, positively regulates the expression of at least three operons, including oxdC-yvrL,

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007630
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22930; Mature: 22930

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDQTLLRAKIKEITRHPLVKHFLSNPRYERLFNHVLEHPDSEEAECLDREFKRFYKKIR
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
MIKYINSMIRIFSVDFDKRVRKNRERFPLMIDDSPNLPEPPRGDLLDDVLEQEEELSEHL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QDPMLYEAFLQLTDKQKKVLAQIYIHGVSMQEIADSLGESRQNISKIHKRALEKIRELLN
HCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKAEGNDNSESAR
CCCCCCCCCCCCC
>Mature Secondary Structure
MIDQTLLRAKIKEITRHPLVKHFLSNPRYERLFNHVLEHPDSEEAECLDREFKRFYKKIR
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
MIKYINSMIRIFSVDFDKRVRKNRERFPLMIDDSPNLPEPPRGDLLDDVLEQEEELSEHL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QDPMLYEAFLQLTDKQKKVLAQIYIHGVSMQEIADSLGESRQNISKIHKRALEKIRELLN
HCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKAEGNDNSESAR
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]