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The map label for this gene is yvrC [H]

Identifier: 52787197

GI number: 52787197

Start: 3345290

End: 3346240

Strand: Reverse

Name: yvrC [H]

Synonym: BLi03506

Alternate gene names: 52787197

Gene position: 3346240-3345290 (Counterclockwise)

Preceding gene: 52787200

Following gene: 52787196

Centisome position: 79.25

GC content: 49.32

Gene sequence:

>951_bases
ATGAAGAAGTTTGGGCTTTTATTGCTGTCGCTGCTGTTGGCTGCCGGCGTCCTTAGCGGCTGCGGCCAAGCGCAAAAACC
GGCAGACGAGCAAAAACAGGAGAAGGCGGCTGAAGCGTTTCCGGTCACCATAAAAGATGCCTCAGGACAAGAGGTCAAAA
TTGAAAAAGAACCGAAGAAAATCGTCTCTCTGATGCCGAGCAATACCGAAATTACATACGCCCTCGGCCTGGGGAAAAAA
GTCGTCGGCGTGACGGATTTTGATACATATCCAAAAGAAGTGAAAAACGTTGAAAAAATCGGGGGCATGGAATTTAATAC
GGAAAAAATCATTTCGTTAAACCCCGACTTGGTCCTGGCCCACGCTTCCAGCATGCAGAGTGCCGAAGAAGGGCTGAAGC
AGCTGAAAGATGCAGGAATTACGGTGGTGACTGTAAATGATGCGGCCTCTTTTGAAGAGACGTACCGGTCGATCGAAATG
ATCGGAAAGGCTGCAGGCGCAGAGGATCAAGCAGCGAGCCTGGTCAAGAGCATGAAATCTGACCTGGCTGGCATAAAAGA
AAAAGCGGCAGCCATATCTAAAGCAGATCAAAAGAAAGTATTTGTCGAAGTGTCTCCGGCTCCGGACATTTATACGACCG
GAAAAGGCACCTTTATGAATGAAATGCTTGAAGCGATCCATGCGGAAAATGCTGCTTCCGCGCAGAAAGGCTGGGCCAAG
ATAACGGAAGAAGCGATCGTCAAGCTGAATCCCGATGCGATCGTGACGACAAACGGCGAATCCGCTGTCAGCGAAATTAA
AAAACGGAGCGGCTGGAGCGGTGTCAAAGCCGTCAAAAATAATGAAGTATACGACGTGGACCCTGACCTCGTGACCCGTC
CGGGGCCGCGATTGATCAAAGGGGTCGAAGAGCTTGCTGAACATATTTACCCTGACGTTTTTAAGAAATAA

Upstream 100 bases:

>100_bases
ACAGATGCGTATAAGTGATGTGCACTTATTTGTACGTTCTTGGTTTGCTGCATCTTTACTGAGTAGAGATGTTTTTATTT
TATCCCGAGGAGGAAGCAGG

Downstream 100 bases:

>100_bases
CCGTTTTGCGGCATATGCCTTCAGCCTGCTGTTTTTGTCGGCATCCGTTCTTATGGGAATCTCTATCGGATCTTTGGAGA
TTCCCATTCCTTCTATTATG

Product: YvrC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKKFGLLLLSLLLAAGVLSGCGQAQKPADEQKQEKAAEAFPVTIKDASGQEVKIEKEPKKIVSLMPSNTEITYALGLGKK
VVGVTDFDTYPKEVKNVEKIGGMEFNTEKIISLNPDLVLAHASSMQSAEEGLKQLKDAGITVVTVNDAASFEETYRSIEM
IGKAAGAEDQAASLVKSMKSDLAGIKEKAAAISKADQKKVFVEVSPAPDIYTTGKGTFMNEMLEAIHAENAASAQKGWAK
ITEEAIVKLNPDAIVTTNGESAVSEIKKRSGWSGVKAVKNNEVYDVDPDLVTRPGPRLIKGVEELAEHIYPDVFKK

Sequences:

>Translated_316_residues
MKKFGLLLLSLLLAAGVLSGCGQAQKPADEQKQEKAAEAFPVTIKDASGQEVKIEKEPKKIVSLMPSNTEITYALGLGKK
VVGVTDFDTYPKEVKNVEKIGGMEFNTEKIISLNPDLVLAHASSMQSAEEGLKQLKDAGITVVTVNDAASFEETYRSIEM
IGKAAGAEDQAASLVKSMKSDLAGIKEKAAAISKADQKKVFVEVSPAPDIYTTGKGTFMNEMLEAIHAENAASAQKGWAK
ITEEAIVKLNPDAIVTTNGESAVSEIKKRSGWSGVKAVKNNEVYDVDPDLVTRPGPRLIKGVEELAEHIYPDVFKK
>Mature_316_residues
MKKFGLLLLSLLLAAGVLSGCGQAQKPADEQKQEKAAEAFPVTIKDASGQEVKIEKEPKKIVSLMPSNTEITYALGLGKK
VVGVTDFDTYPKEVKNVEKIGGMEFNTEKIISLNPDLVLAHASSMQSAEEGLKQLKDAGITVVTVNDAASFEETYRSIEM
IGKAAGAEDQAASLVKSMKSDLAGIKEKAAAISKADQKKVFVEVSPAPDIYTTGKGTFMNEMLEAIHAENAASAQKGWAK
ITEEAIVKLNPDAIVTTNGESAVSEIKKRSGWSGVKAVKNNEVYDVDPDLVTRPGPRLIKGVEELAEHIYPDVFKK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=252, Percent_Identity=28.5714285714286, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33923; Mature: 33923

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFGLLLLSLLLAAGVLSGCGQAQKPADEQKQEKAAEAFPVTIKDASGQEVKIEKEPKK
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCHHH
IVSLMPSNTEITYALGLGKKVVGVTDFDTYPKEVKNVEKIGGMEFNTEKIISLNPDLVLA
HHHHCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCEEEE
HASSMQSAEEGLKQLKDAGITVVTVNDAASFEETYRSIEMIGKAAGAEDQAASLVKSMKS
EHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
DLAGIKEKAAAISKADQKKVFVEVSPAPDIYTTGKGTFMNEMLEAIHAENAASAQKGWAK
HHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHCCHHHHHHHHHH
ITEEAIVKLNPDAIVTTNGESAVSEIKKRSGWSGVKAVKNNEVYDVDPDLVTRPGPRLIK
HHHHHHEEECCCEEEEECCHHHHHHHHHHCCCCHHHHHCCCCCEECCCCCCCCCCHHHHH
GVEELAEHIYPDVFKK
HHHHHHHHHCHHHHCC
>Mature Secondary Structure
MKKFGLLLLSLLLAAGVLSGCGQAQKPADEQKQEKAAEAFPVTIKDASGQEVKIEKEPKK
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCHHH
IVSLMPSNTEITYALGLGKKVVGVTDFDTYPKEVKNVEKIGGMEFNTEKIISLNPDLVLA
HHHHCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCEEEE
HASSMQSAEEGLKQLKDAGITVVTVNDAASFEETYRSIEMIGKAAGAEDQAASLVKSMKS
EHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
DLAGIKEKAAAISKADQKKVFVEVSPAPDIYTTGKGTFMNEMLEAIHAENAASAQKGWAK
HHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCCCHHHHHHHHHHHHCCHHHHHHHHHH
ITEEAIVKLNPDAIVTTNGESAVSEIKKRSGWSGVKAVKNNEVYDVDPDLVTRPGPRLIK
HHHHHHEEECCCEEEEECCHHHHHHHHHHCCCCHHHHHCCCCCEECCCCCCCCCCHHHHH
GVEELAEHIYPDVFKK
HHHHHHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]