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The map label for this gene is yubA [H]

Identifier: 52786989

GI number: 52786989

Start: 3153923

End: 3155068

Strand: Reverse

Name: yubA [H]

Synonym: BLi03291

Alternate gene names: 52786989

Gene position: 3155068-3153923 (Counterclockwise)

Preceding gene: 52786990

Following gene: 52786988

Centisome position: 74.72

GC content: 45.03

Gene sequence:

>1146_bases
ATGGACTCTTTGCATATGTGGGGCGGCAGGTTTAAAAAGTTTTTTTTAGACAATAAATTCGTCCTGTTTCTGCTTATTCT
GCTTTTGATCGGACTGAACATCCTTGTATTTACAAAAGCATCGTTTATTTTCACGCCTTTCATCGTTCTTGTGGAAACCA
TCGCTCTGCCTGTCGTGCTGACAGGTGTCGTTTATTATTTGTTAAATCCGATCGTTGATTTTCTAGAGTGGAAAAACGTG
AAAAGAATTTATTCGATTCTTCTTCTCTACATTGTGATCATCGGTCTGATCACGATTTCGATCGTCTCTGTTATCCCGCT
GTTAAGGGAACAGATCACAAGCCTTGTCGATAACTTCCCAAGGTATGTCCACATTGTGGAAGACCAAATTAAACAGCTGA
TCGGAAGCCAGTTCTTTAATCAGGTCCAGCAGACGATGAACATCAATCTGACCGATTTGGCAAGCAAATTATCCGATCAG
GCTACCACCATTTTAAACAGTACGTTTACCGGTGTGGGAACGTTCATAGGCGCCGTGACAGAGGTCGTGATTTCGATTGT
GACCGTGCCGTTTATCCTGTTTTACTTGTTGAAAGACGGCAAAAAACTGCCGCTGTTTATTCTAAAACTCATACCGGTCC
GCCTGCGGGAGCAGACGTATGTGATGATGTCCGAGATGAATCACCGGCTGAGTTCGTATATCAGGGGGCAGATCATCGTC
AGCTTCTGTATCGGCTGCCTGTTGTTTATCGGATATATGATCATCGGTCTTGATTATGCTTCTCTTTTGGCCCTTGTGGC
GGCGTGTACGAGCATCGTTCCGTATCTCGGACCGACGATTGCGATTACGCCGGCAATCATCATCGCTTTGGTCACTTCTC
CGTTTATGCTTGTGAAGCTGATCATCGTTTGGACTGTGGTGCAGCTGTTTGAAGGAAAATTTATTTCGCCGCAGATTATG
GGAAAAAACCTGCACATCCATCCGGTAACAATCATCTTTGTGCTGCTGACGGCAGCCAAGCTGTTCGGCGTGATCGGCGT
CATTCTCGCCATCCCCGGATACGCGGTCATCAAAGTGGTTGTCACGCATTTATTTGAATGGTTTAAACAGCGTTCACACC
TTTACGAAAAAAACGAAGAAGTCTGA

Upstream 100 bases:

>100_bases
TCAAGCGGAAAAAAAGACCAATAGCAATGGTTTTATTTTTAGTATGAGGAGTAATAGTGTACAATTTAATTTATAAAACC
AACGTTAATGGAGGATCGCC

Downstream 100 bases:

>100_bases
ATCCCGCTTGCATAATCGGCTTTTAATATAAATAGTTTATTAGAGGACAAGTTTTAAGGAAGCGAAAGGAATGACATATG
AACATTTGGGATATTATTGT

Product: YubA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDSLHMWGGRFKKFFLDNKFVLFLLILLLIGLNILVFTKASFIFTPFIVLVETIALPVVLTGVVYYLLNPIVDFLEWKNV
KRIYSILLLYIVIIGLITISIVSVIPLLREQITSLVDNFPRYVHIVEDQIKQLIGSQFFNQVQQTMNINLTDLASKLSDQ
ATTILNSTFTGVGTFIGAVTEVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLREQTYVMMSEMNHRLSSYIRGQIIV
SFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYLGPTIAITPAIIIALVTSPFMLVKLIIVWTVVQLFEGKFISPQIM
GKNLHIHPVTIIFVLLTAAKLFGVIGVILAIPGYAVIKVVVTHLFEWFKQRSHLYEKNEEV

Sequences:

>Translated_381_residues
MDSLHMWGGRFKKFFLDNKFVLFLLILLLIGLNILVFTKASFIFTPFIVLVETIALPVVLTGVVYYLLNPIVDFLEWKNV
KRIYSILLLYIVIIGLITISIVSVIPLLREQITSLVDNFPRYVHIVEDQIKQLIGSQFFNQVQQTMNINLTDLASKLSDQ
ATTILNSTFTGVGTFIGAVTEVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLREQTYVMMSEMNHRLSSYIRGQIIV
SFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYLGPTIAITPAIIIALVTSPFMLVKLIIVWTVVQLFEGKFISPQIM
GKNLHIHPVTIIFVLLTAAKLFGVIGVILAIPGYAVIKVVVTHLFEWFKQRSHLYEKNEEV
>Mature_381_residues
MDSLHMWGGRFKKFFLDNKFVLFLLILLLIGLNILVFTKASFIFTPFIVLVETIALPVVLTGVVYYLLNPIVDFLEWKNV
KRIYSILLLYIVIIGLITISIVSVIPLLREQITSLVDNFPRYVHIVEDQIKQLIGSQFFNQVQQTMNINLTDLASKLSDQ
ATTILNSTFTGVGTFIGAVTEVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLREQTYVMMSEMNHRLSSYIRGQIIV
SFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYLGPTIAITPAIIIALVTSPFMLVKLIIVWTVVQLFEGKFISPQIM
GKNLHIHPVTIIFVLLTAAKLFGVIGVILAIPGYAVIKVVVTHLFEWFKQRSHLYEKNEEV

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=333, Percent_Identity=24.024024024024, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082271, Length=302, Percent_Identity=20.5298013245033, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 42945; Mature: 42945

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLHMWGGRFKKFFLDNKFVLFLLILLLIGLNILVFTKASFIFTPFIVLVETIALPVVL
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVVYYLLNPIVDFLEWKNVKRIYSILLLYIVIIGLITISIVSVIPLLREQITSLVDNFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RYVHIVEDQIKQLIGSQFFNQVQQTMNINLTDLASKLSDQATTILNSTFTGVGTFIGAVT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLREQTYVMMSEMNHRLSSYIRGQIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYLGPTIAITPAIIIALVTSPFMLVKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IIVWTVVQLFEGKFISPQIMGKNLHIHPVTIIFVLLTAAKLFGVIGVILAIPGYAVIKVV
HHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VTHLFEWFKQRSHLYEKNEEV
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDSLHMWGGRFKKFFLDNKFVLFLLILLLIGLNILVFTKASFIFTPFIVLVETIALPVVL
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGVVYYLLNPIVDFLEWKNVKRIYSILLLYIVIIGLITISIVSVIPLLREQITSLVDNFP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
RYVHIVEDQIKQLIGSQFFNQVQQTMNINLTDLASKLSDQATTILNSTFTGVGTFIGAVT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLREQTYVMMSEMNHRLSSYIRGQIIV
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYLGPTIAITPAIIIALVTSPFMLVKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IIVWTVVQLFEGKFISPQIMGKNLHIHPVTIIFVLLTAAKLFGVIGVILAIPGYAVIKVV
HHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VTHLFEWFKQRSHLYEKNEEV
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]