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The map label for this gene is araR [H]

Identifier: 52786957

GI number: 52786957

Start: 3123786

End: 3124886

Strand: Reverse

Name: araR [H]

Synonym: BLi03256

Alternate gene names: 52786957

Gene position: 3124886-3123786 (Counterclockwise)

Preceding gene: 52786959

Following gene: 52786956

Centisome position: 74.0

GC content: 43.14

Gene sequence:

>1101_bases
ATGAGTGAACTCACAAAATACAGCATGGTGAAAAATGAAATTAAATCGTGGATATATGAAGGCAAAGTGAAGCCGGGCGA
AAAAATCCATTCGGAAAACGAATTGATGAAAATATTTGATGTGAGCAGGCATACGATCCGGCAAGCAATTGGCGACCTTG
TTCATGAAGGGCTTTTATACAGAGAGCAAGGCTCAGGGACGTATTGCTCTCACCGCCTGCAGCTTTCTGAAAAAGGAAGG
GAAAGAAATAAGATGATTGGGGTCATTACGACTTACCTTTCGGATTACATTTTTCCTTCTATTATAAGAGGAATCGAATC
TTCATTGTCGAGTGCAGGTTACACCTTGGTCGTCGCGAGCACGAATAATGACATTGAAAAAGAAAAACAATGTCTTGTAA
ATATGCTTGACAAAAAAATTGATGGGTTGATTGTGGAGCCGACGAAAACCGGCAGCTTTAATCCGAATTTAAATTACTAT
CTGACCCTTGAACAGCACCATATACCATATTTGATGATCAACCAATTATATCAGGAGTTAAACCCGCCTCATTTCATTTT
GGATGATGAGCACGGCGGTTTTATCGCCACGGAGCATTTGATTAAGCTAGGCCATGAAAAAGTGTTCGGTTTTTTTAAAC
AGGACGATATGCAGGGCGTCAACCGGATGAAAGGATTTATCCGGGCTTTCAGGGAAAACGGCTTGTCGTTTTATCCGGAG
ATGGTCGTGACTTACACAACAGAGAACAAAAAAGAAAAAACGATTGCTGAGGCAAGGAAGCGGCTTTCCTCAGCAGACCG
CCCGACTGCCATATTCTGCTATAATGATGAGATAGCACTTATAGTGTTGGATGTCGTAAGGGAATTCGGTTTGAAAGTAC
CGGACGACATATCAATTGTCGGATATGACGACTCACACTTGAGCGAGGCGTCTGAAGTGAAGCTGACATCAGTCACCCAT
CCGAAAATGCAGATGGGGATTGAGGCGGCAAAATGGATGATTGCCAAAGTTGAGGGACGGAACACGGATAAGCTTGAGCA
TTCTACCGTCTATAAACCTGAACTTGTTGTCAGACATTCGACCGCCAAGCCGAAAAGGTAG

Upstream 100 bases:

>100_bases
AAAACTTTTGCTGAAACCCTCCAATATGTAGCAATGCAAACATCTTTTCCTTATAATAGAACTTATTCATACGTACAAGA
TGCAGTAAAGGGTTGATCTG

Downstream 100 bases:

>100_bases
GCTGATCAGCTTTACCCATACAAGCGATTCGAGTATTCGGCTGCTTTCGTTGCCAACAGCACGACAGAGTGAATGTCATG
AGACAAAGATAGATCCTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSELTKYSMVKNEIKSWIYEGKVKPGEKIHSENELMKIFDVSRHTIRQAIGDLVHEGLLYREQGSGTYCSHRLQLSEKGR
ERNKMIGVITTYLSDYIFPSIIRGIESSLSSAGYTLVVASTNNDIEKEKQCLVNMLDKKIDGLIVEPTKTGSFNPNLNYY
LTLEQHHIPYLMINQLYQELNPPHFILDDEHGGFIATEHLIKLGHEKVFGFFKQDDMQGVNRMKGFIRAFRENGLSFYPE
MVVTYTTENKKEKTIAEARKRLSSADRPTAIFCYNDEIALIVLDVVREFGLKVPDDISIVGYDDSHLSEASEVKLTSVTH
PKMQMGIEAAKWMIAKVEGRNTDKLEHSTVYKPELVVRHSTAKPKR

Sequences:

>Translated_366_residues
MSELTKYSMVKNEIKSWIYEGKVKPGEKIHSENELMKIFDVSRHTIRQAIGDLVHEGLLYREQGSGTYCSHRLQLSEKGR
ERNKMIGVITTYLSDYIFPSIIRGIESSLSSAGYTLVVASTNNDIEKEKQCLVNMLDKKIDGLIVEPTKTGSFNPNLNYY
LTLEQHHIPYLMINQLYQELNPPHFILDDEHGGFIATEHLIKLGHEKVFGFFKQDDMQGVNRMKGFIRAFRENGLSFYPE
MVVTYTTENKKEKTIAEARKRLSSADRPTAIFCYNDEIALIVLDVVREFGLKVPDDISIVGYDDSHLSEASEVKLTSVTH
PKMQMGIEAAKWMIAKVEGRNTDKLEHSTVYKPELVVRHSTAKPKR
>Mature_365_residues
SELTKYSMVKNEIKSWIYEGKVKPGEKIHSENELMKIFDVSRHTIRQAIGDLVHEGLLYREQGSGTYCSHRLQLSEKGRE
RNKMIGVITTYLSDYIFPSIIRGIESSLSSAGYTLVVASTNNDIEKEKQCLVNMLDKKIDGLIVEPTKTGSFNPNLNYYL
TLEQHHIPYLMINQLYQELNPPHFILDDEHGGFIATEHLIKLGHEKVFGFFKQDDMQGVNRMKGFIRAFRENGLSFYPEM
VVTYTTENKKEKTIAEARKRLSSADRPTAIFCYNDEIALIVLDVVREFGLKVPDDISIVGYDDSHLSEASEVKLTSVTHP
KMQMGIEAAKWMIAKVEGRNTDKLEHSTVYKPELVVRHSTAKPKR

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=287, Percent_Identity=27.1777003484321, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787948, Length=283, Percent_Identity=27.9151943462898, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789202, Length=291, Percent_Identity=25.085910652921, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI48994940, Length=263, Percent_Identity=28.1368821292776, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790194, Length=258, Percent_Identity=27.5193798449612, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790715, Length=273, Percent_Identity=25.6410256410256, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788474, Length=283, Percent_Identity=23.6749116607774, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786540, Length=340, Percent_Identity=22.6470588235294, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789068, Length=257, Percent_Identity=21.4007782101167, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787906, Length=268, Percent_Identity=21.6417910447761, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787580, Length=254, Percent_Identity=19.6850393700787, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 41855; Mature: 41723

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELTKYSMVKNEIKSWIYEGKVKPGEKIHSENELMKIFDVSRHTIRQAIGDLVHEGLLY
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
REQGSGTYCSHRLQLSEKGRERNKMIGVITTYLSDYIFPSIIRGIESSLSSAGYTLVVAS
EECCCCCEEHHEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
TNNDIEKEKQCLVNMLDKKIDGLIVEPTKTGSFNPNLNYYLTLEQHHIPYLMINQLYQEL
CCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHC
NPPHFILDDEHGGFIATEHLIKLGHEKVFGFFKQDDMQGVNRMKGFIRAFRENGLSFYPE
CCCEEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MVVTYTTENKKEKTIAEARKRLSSADRPTAIFCYNDEIALIVLDVVREFGLKVPDDISIV
EEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEE
GYDDSHLSEASEVKLTSVTHPKMQMGIEAAKWMIAKVEGRNTDKLEHSTVYKPELVVRHS
ECCHHHHCCHHCEEEEECCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEC
TAKPKR
CCCCCC
>Mature Secondary Structure 
SELTKYSMVKNEIKSWIYEGKVKPGEKIHSENELMKIFDVSRHTIRQAIGDLVHEGLLY
CCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEE
REQGSGTYCSHRLQLSEKGRERNKMIGVITTYLSDYIFPSIIRGIESSLSSAGYTLVVAS
EECCCCCEEHHEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
TNNDIEKEKQCLVNMLDKKIDGLIVEPTKTGSFNPNLNYYLTLEQHHIPYLMINQLYQEL
CCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHC
NPPHFILDDEHGGFIATEHLIKLGHEKVFGFFKQDDMQGVNRMKGFIRAFRENGLSFYPE
CCCEEEEECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MVVTYTTENKKEKTIAEARKRLSSADRPTAIFCYNDEIALIVLDVVREFGLKVPDDISIV
EEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEE
GYDDSHLSEASEVKLTSVTHPKMQMGIEAAKWMIAKVEGRNTDKLEHSTVYKPELVVRHS
ECCHHHHCCHHCEEEEECCCCHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEEEEC
TAKPKR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]