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The map label for this gene is ythB [H]

Identifier: 52786940

GI number: 52786940

Start: 3096393

End: 3097445

Strand: Direct

Name: ythB [H]

Synonym: BLi03216

Alternate gene names: 52786940

Gene position: 3096393-3097445 (Clockwise)

Preceding gene: 52786939

Following gene: 52786941

Centisome position: 73.33

GC content: 47.01

Gene sequence:

>1053_bases
ATGATGCAACTGGATGGAACAACAGATGCCCTGCTGGCTATTTCGATCGTCTGGGGATTTATATTTATATACGCCGTTAT
GGCGTCGATGGATTTTGGAGCGGGATTTTGGTCGATGATTTATATGAACAAAAAACAGCTGAAAGCAACCAATATTGCAA
ACCGCTATCTTTCTCCGACCTGGGAAGTAACCAATGTTTTCATCGTCGGAATCGTCGTAGCCCTTTTCAGCTTTTTCCCG
GGCGGCACTTTTGTGCTGGGGACTGTGCTTTTGATTCCCGGCAGCATCATTTTATTGCTTTTGGCGATTCGAAGCGGATT
TTTGGTCTTCTCCCACGCTGCAAAAGATTATGAAAGGGCGCTGACTTACGTTTCAGGGATCAGCGGCTTTATCATTCCGG
CTGTTTTAATCCTTGTCTTGCCTGTGACACACGGCAATTTCGTATACCAGGTAGACGGAAGCCACCAATTGGACTTTGTC
AATTTGTTTTTAAGCCCTCATGCCTATTCTTTTATGGGCTTCGCCATTTTCAGTACGCTGTTTCTGTCTTCACTGCTGCT
GGCTGATTTTTCAAATGTAGCCGGAGAAAAAGACGCGTATCAGGTCTACCGCCGAAACGCTTTAATTACCGGGCCGCTCG
CACTGCTCATGTCGTTCAGCATCATGATGACCATGAGGACGGAAGCCAGCTGGCTTTATACAAAAATGATGGACGGGCTT
CCATGGCTGATTTTATCGTTTTTGCTGTTTCTCGTCGCATTTGCGGCTCTGTTTCTGCCAAACAGACATAACAGCGACCG
GCTGGGAAAGCCGCGCCTGGCTGTCATCGCCATTACGCTGCAGTATTTTACGGCGAGCTATGTGTACGGGAGGGCGCACC
TTCCTTACATGGTCTATCCTGATGTCACGATTCAATCGGGCTTCACCGCACCGGAGACATTCAGGGCGCTGTTCATCTCC
TACATCGTCGGTTTTATTATTTTATTCCCCGGCTTTTATTATTTCTGGAAATTGTTCATGAAGGACAAGCGGTACATCAA
ACAGCATGAATAA

Upstream 100 bases:

>100_bases
CAGCGGTGGTGTTCGTATTGCAATATTACTTTAAACGCCATCCTGTTGAAGAGGACTTAAAAAGCAGCTGAATGCACAAA
AAAAACAGAAGGGAAGTCAT

Downstream 100 bases:

>100_bases
GGTTAAGCTAAATGTGTACAACTTTTAAAGGGGGCCCAAACTAAATGGAGCAAAAAATACTGTGTGAAGTCAGCAACTGC
ACCTATTGGGAAGAGGGTAA

Product: YthB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MMQLDGTTDALLAISIVWGFIFIYAVMASMDFGAGFWSMIYMNKKQLKATNIANRYLSPTWEVTNVFIVGIVVALFSFFP
GGTFVLGTVLLIPGSIILLLLAIRSGFLVFSHAAKDYERALTYVSGISGFIIPAVLILVLPVTHGNFVYQVDGSHQLDFV
NLFLSPHAYSFMGFAIFSTLFLSSLLLADFSNVAGEKDAYQVYRRNALITGPLALLMSFSIMMTMRTEASWLYTKMMDGL
PWLILSFLLFLVAFAALFLPNRHNSDRLGKPRLAVIAITLQYFTASYVYGRAHLPYMVYPDVTIQSGFTAPETFRALFIS
YIVGFIILFPGFYYFWKLFMKDKRYIKQHE

Sequences:

>Translated_350_residues
MMQLDGTTDALLAISIVWGFIFIYAVMASMDFGAGFWSMIYMNKKQLKATNIANRYLSPTWEVTNVFIVGIVVALFSFFP
GGTFVLGTVLLIPGSIILLLLAIRSGFLVFSHAAKDYERALTYVSGISGFIIPAVLILVLPVTHGNFVYQVDGSHQLDFV
NLFLSPHAYSFMGFAIFSTLFLSSLLLADFSNVAGEKDAYQVYRRNALITGPLALLMSFSIMMTMRTEASWLYTKMMDGL
PWLILSFLLFLVAFAALFLPNRHNSDRLGKPRLAVIAITLQYFTASYVYGRAHLPYMVYPDVTIQSGFTAPETFRALFIS
YIVGFIILFPGFYYFWKLFMKDKRYIKQHE
>Mature_350_residues
MMQLDGTTDALLAISIVWGFIFIYAVMASMDFGAGFWSMIYMNKKQLKATNIANRYLSPTWEVTNVFIVGIVVALFSFFP
GGTFVLGTVLLIPGSIILLLLAIRSGFLVFSHAAKDYERALTYVSGISGFIIPAVLILVLPVTHGNFVYQVDGSHQLDFV
NLFLSPHAYSFMGFAIFSTLFLSSLLLADFSNVAGEKDAYQVYRRNALITGPLALLMSFSIMMTMRTEASWLYTKMMDGL
PWLILSFLLFLVAFAALFLPNRHNSDRLGKPRLAVIAITLQYFTASYVYGRAHLPYMVYPDVTIQSGFTAPETFRALFIS
YIVGFIILFPGFYYFWKLFMKDKRYIKQHE

Specific function: Unknown

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 39528; Mature: 39528

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQLDGTTDALLAISIVWGFIFIYAVMASMDFGAGFWSMIYMNKKQLKATNIANRYLSPT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
WEVTNVFIVGIVVALFSFFPGGTFVLGTVLLIPGSIILLLLAIRSGFLVFSHAAKDYERA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHH
LTYVSGISGFIIPAVLILVLPVTHGNFVYQVDGSHQLDFVNLFLSPHAYSFMGFAIFSTL
HHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHEEECCCHHHHHHHHHHHHH
FLSSLLLADFSNVAGEKDAYQVYRRNALITGPLALLMSFSIMMTMRTEASWLYTKMMDGL
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PWLILSFLLFLVAFAALFLPNRHNSDRLGKPRLAVIAITLQYFTASYVYGRAHLPYMVYP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECC
DVTIQSGFTAPETFRALFISYIVGFIILFPGFYYFWKLFMKDKRYIKQHE
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMQLDGTTDALLAISIVWGFIFIYAVMASMDFGAGFWSMIYMNKKQLKATNIANRYLSPT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
WEVTNVFIVGIVVALFSFFPGGTFVLGTVLLIPGSIILLLLAIRSGFLVFSHAAKDYERA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHH
LTYVSGISGFIIPAVLILVLPVTHGNFVYQVDGSHQLDFVNLFLSPHAYSFMGFAIFSTL
HHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEHHHEEECCCHHHHHHHHHHHHH
FLSSLLLADFSNVAGEKDAYQVYRRNALITGPLALLMSFSIMMTMRTEASWLYTKMMDGL
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PWLILSFLLFLVAFAALFLPNRHNSDRLGKPRLAVIAITLQYFTASYVYGRAHLPYMVYP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECC
DVTIQSGFTAPETFRALFISYIVGFIILFPGFYYFWKLFMKDKRYIKQHE
CCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]