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The map label for this gene is ytcP [H]

Identifier: 52786894

GI number: 52786894

Start: 3052508

End: 3053314

Strand: Reverse

Name: ytcP [H]

Synonym: BLi03169

Alternate gene names: 52786894

Gene position: 3053314-3052508 (Counterclockwise)

Preceding gene: 52786895

Following gene: 52786893

Centisome position: 72.31

GC content: 47.09

Gene sequence:

>807_bases
TTGGTTTGTGTGCTGCCGTTCATCCACGTTATTGCAGCCTCTTTTGCGACAGTCGAGGAGGTTATTTCGAAAAAGTTTAT
TTTAATACCGACGACTTTTTCGCTGGATGCGTACAGGTATATTTTTTCAACTGACATTGTGTACAGGAGCTTAATCGTTT
CTATTCTTGTCACAGCCGTAGGGACGGCGGTCAGCATGTTTCTTTCCTCTTTAATGGCATACGGGCTGTCGAGAAAGGAG
CTGATGGGAAGGCGCGTCCTGATGTTCTTGGTCGTGTTCACGATGCTGTTCAGCGGAGGGATGATCCCGACCTTTCTCGT
CGTAAAATCGCTCGGATTGCTCGATACCTATTGGTCTCTGATTCTTCCGACCGCCATCAATGCGTTTAACTTGATTATTT
TAAAGAACTTTTTTCAAAACATACCGTCAAGCCTCGAGGAATCCGCCAAAATCGACGGCTGCAATGACATCGGCATCTTC
TTCCGCATCATTCTTCCGTTGTCTTTGCCGGCGATCGCGACGATTTCGCTGTTTTACGCCGTCACCTATTGGAATACGTA
CATGCAGGCGATTCTGTACTTGAGCGATGCGACAAAATGGCCGATACAAGTTTTGCTTCGCCAGATTGTCATCGTATCAA
GCGGTATGCAAGGGGATATGACGGAAATGGGAGCAGCCGCGGCGCCGCCGGAACAAACGATCAAAATGGCGGTCATTGTC
GTTGCAACCATACCTGTGCTGCTCGTGTATCCGTTTATTCAAAAACACTTTGCAAAAGGCGCTCTTTTAGGGTCAATTAA
AGGATAA

Upstream 100 bases:

>100_bases
ATTTTGACAGCGCTTACAAGGAGGGGGAATAACGATCAGGCATTCTGCTGGAAGCCGCGTGTTTGACATATTGAATTATT
CATTTTTAACAGGGTTCGGA

Downstream 100 bases:

>100_bases
AAACGGAGGGGACAATATGGGGAAAAAATGGCTGATCCCGATTTTTGCGTTCGTGCTTTTGGCCGGCGGACTGCTTGGCT
GTTCGAACAGCGGAGCAGAC

Product: YtcP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MVCVLPFIHVIAASFATVEEVISKKFILIPTTFSLDAYRYIFSTDIVYRSLIVSILVTAVGTAVSMFLSSLMAYGLSRKE
LMGRRVLMFLVVFTMLFSGGMIPTFLVVKSLGLLDTYWSLILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDIGIF
FRIILPLSLPAIATISLFYAVTYWNTYMQAILYLSDATKWPIQVLLRQIVIVSSGMQGDMTEMGAAAAPPEQTIKMAVIV
VATIPVLLVYPFIQKHFAKGALLGSIKG

Sequences:

>Translated_268_residues
MVCVLPFIHVIAASFATVEEVISKKFILIPTTFSLDAYRYIFSTDIVYRSLIVSILVTAVGTAVSMFLSSLMAYGLSRKE
LMGRRVLMFLVVFTMLFSGGMIPTFLVVKSLGLLDTYWSLILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDIGIF
FRIILPLSLPAIATISLFYAVTYWNTYMQAILYLSDATKWPIQVLLRQIVIVSSGMQGDMTEMGAAAAPPEQTIKMAVIV
VATIPVLLVYPFIQKHFAKGALLGSIKG
>Mature_268_residues
MVCVLPFIHVIAASFATVEEVISKKFILIPTTFSLDAYRYIFSTDIVYRSLIVSILVTAVGTAVSMFLSSLMAYGLSRKE
LMGRRVLMFLVVFTMLFSGGMIPTFLVVKSLGLLDTYWSLILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDIGIF
FRIILPLSLPAIATISLFYAVTYWNTYMQAILYLSDATKWPIQVLLRQIVIVSSGMQGDMTEMGAAAAPPEQTIKMAVIV
VATIPVLLVYPFIQKHFAKGALLGSIKG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=282, Percent_Identity=29.0780141843972, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=22.8464419475655, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29562; Mature: 29562

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVCVLPFIHVIAASFATVEEVISKKFILIPTTFSLDAYRYIFSTDIVYRSLIVSILVTAV
CEEHHHHHHHHHHHHHHHHHHHCCCEEEEECEECHHHHHHHHHHHHHHHHHHHHHHHHHH
GTAVSMFLSSLMAYGLSRKELMGRRVLMFLVVFTMLFSGGMIPTFLVVKSLGLLDTYWSL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDIGIFFRIILPLSLPAIATISLFYA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
VTYWNTYMQAILYLSDATKWPIQVLLRQIVIVSSGMQGDMTEMGAAAAPPEQTIKMAVIV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHH
VATIPVLLVYPFIQKHFAKGALLGSIKG
HHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVCVLPFIHVIAASFATVEEVISKKFILIPTTFSLDAYRYIFSTDIVYRSLIVSILVTAV
CEEHHHHHHHHHHHHHHHHHHHCCCEEEEECEECHHHHHHHHHHHHHHHHHHHHHHHHHH
GTAVSMFLSSLMAYGLSRKELMGRRVLMFLVVFTMLFSGGMIPTFLVVKSLGLLDTYWSL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDIGIFFRIILPLSLPAIATISLFYA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
VTYWNTYMQAILYLSDATKWPIQVLLRQIVIVSSGMQGDMTEMGAAAAPPEQTIKMAVIV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHH
VATIPVLLVYPFIQKHFAKGALLGSIKG
HHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]