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The map label for this gene is ytcQ [H]

Identifier: 52786893

GI number: 52786893

Start: 3050986

End: 3052491

Strand: Reverse

Name: ytcQ [H]

Synonym: BLi03168

Alternate gene names: 52786893

Gene position: 3052491-3050986 (Counterclockwise)

Preceding gene: 52786894

Following gene: 52786891

Centisome position: 72.29

GC content: 46.02

Gene sequence:

>1506_bases
ATGGGGAAAAAATGGCTGATCCCGATTTTTGCGTTCGTGCTTTTGGCCGGCGGACTGCTTGGCTGTTCGAACAGCGGAGC
AGACCAGGCTTCTTCGAAGGAGGAGAAAGTCGATTTGAACTCGCCTTTGGACTTGAGCTGGATGGTGATCCTTTACCATC
AGCAGCCGCCGAAGGACACGGCGATTAAAAAAATCGAGGAACTCACCAATACTAAGCTCGATTTAATGTGGGTGCCTGAT
GCGGTAAAAGAGGACCGTTTAAACTCAGCGCTCGCCGCCGGAAACCTGCCGAAAGTCGTCACCATTCAGGACATTAAAAA
TTCATCTGTCATGAATGCATTCAGATCGGGGATGTTTTGGGAAGTCGGACCTTATTTAAAGGATTATCCGAATTTAAGCA
AGATGAACAAGCTGATCAATAAAAACGCTTCAATCGACGGAAAGCTTTATGGCATCTACAGGGAGCGCCCGTTATCAAGA
CAGGGGATCGTCATCCGTAAAGACTGGCTTGACAACCTTGGACTCGATATGCCGAAGACAGTTGATGAACTTTACGAAAC
AGCGAAGGCATTTACAGAAAAAGATCCTGATCAAAACGGGAAAAACGATACGATCGGCTTTGCCGACAGAAACGATTTGA
TCTACGGCGCCTTTAAAACATTGGGGTCCTATATGGGCATGCCGACTGATTGGGAGGAAAAAGACGGCAAGTTCACGCCT
GACTTCATGACAAAAGAGTACATGGATACGATGAAATATATGAAAAAGCTGTATGATGAAGGGCTGATCAACAAAGACTT
TCCGGTGACGAGCAAAACGCAGCAGCAAGAAATGTTTTCACAAGGGAAGGCCGGCATTTATGTCGGAAATATGGTTGATG
CCGTCAATCTAAGAGACCAGTCTGTCGATGATAAAATGGAACTTGAGATCATCAATCGGATCAAAGGGCCGGACGGAAAG
GAACGCGTCTGGGCATCAGGCGGGCATAACGGAATCTTTGCCTTCCCGAAAACTAGCGTCAAAACAGAAAAAGAGCTGAA
GAGGATTCTGGCCTTTTTCGACCGGATCGCCGAAGAGGATGTTTACAGTCTGATGACATACGGGATCGAAGGCGTTCACT
ATAAAAAAGAAGGGAATAAACAATTCAAACGGATCGACGAGAAACTGAAAGACTGGCAGGCGGAAATTCAGCCGCTCGTT
TCTCTCGTCGGCATTGATAAGCAATATTTGAAAAATACGGGCGATCCGCTCCGCACAAAATATGAAGAGCTGACAGAGGA
CAATAACGAAATCATCGTCTCAAACCCGGCCGAAAGCCTGTACTCACCGGCCGCATCTGAAAGAGGCGATGAACTGCAAA
AGATCATTGATGATGCCACATACCAATTCATTCTCGGCAAAATCAATGAAAGCCAGTTCGAGAAAGCGGTTGAAAAATGG
CGCACGAACGGCGGAAATCAAGTCATAGAAGAATATGAGGAGTCATTTAAAAAAGCAGAAAAATAG

Upstream 100 bases:

>100_bases
GCAACCATACCTGTGCTGCTCGTGTATCCGTTTATTCAAAAACACTTTGCAAAAGGCGCTCTTTTAGGGTCAATTAAAGG
ATAAAAACGGAGGGGACAAT

Downstream 100 bases:

>100_bases
AAGACAATCCCGGGGAGCCGGGATTGTCAGCGTGTCGACAAACCCTCGCATTCGTTGTCAGGCCTGCGCGTCGGTGCTCA
CGAATTCCAACATTCGCTGC

Product: YtcQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MGKKWLIPIFAFVLLAGGLLGCSNSGADQASSKEEKVDLNSPLDLSWMVILYHQQPPKDTAIKKIEELTNTKLDLMWVPD
AVKEDRLNSALAAGNLPKVVTIQDIKNSSVMNAFRSGMFWEVGPYLKDYPNLSKMNKLINKNASIDGKLYGIYRERPLSR
QGIVIRKDWLDNLGLDMPKTVDELYETAKAFTEKDPDQNGKNDTIGFADRNDLIYGAFKTLGSYMGMPTDWEEKDGKFTP
DFMTKEYMDTMKYMKKLYDEGLINKDFPVTSKTQQQEMFSQGKAGIYVGNMVDAVNLRDQSVDDKMELEIINRIKGPDGK
ERVWASGGHNGIFAFPKTSVKTEKELKRILAFFDRIAEEDVYSLMTYGIEGVHYKKEGNKQFKRIDEKLKDWQAEIQPLV
SLVGIDKQYLKNTGDPLRTKYEELTEDNNEIIVSNPAESLYSPAASERGDELQKIIDDATYQFILGKINESQFEKAVEKW
RTNGGNQVIEEYEESFKKAEK

Sequences:

>Translated_501_residues
MGKKWLIPIFAFVLLAGGLLGCSNSGADQASSKEEKVDLNSPLDLSWMVILYHQQPPKDTAIKKIEELTNTKLDLMWVPD
AVKEDRLNSALAAGNLPKVVTIQDIKNSSVMNAFRSGMFWEVGPYLKDYPNLSKMNKLINKNASIDGKLYGIYRERPLSR
QGIVIRKDWLDNLGLDMPKTVDELYETAKAFTEKDPDQNGKNDTIGFADRNDLIYGAFKTLGSYMGMPTDWEEKDGKFTP
DFMTKEYMDTMKYMKKLYDEGLINKDFPVTSKTQQQEMFSQGKAGIYVGNMVDAVNLRDQSVDDKMELEIINRIKGPDGK
ERVWASGGHNGIFAFPKTSVKTEKELKRILAFFDRIAEEDVYSLMTYGIEGVHYKKEGNKQFKRIDEKLKDWQAEIQPLV
SLVGIDKQYLKNTGDPLRTKYEELTEDNNEIIVSNPAESLYSPAASERGDELQKIIDDATYQFILGKINESQFEKAVEKW
RTNGGNQVIEEYEESFKKAEK
>Mature_500_residues
GKKWLIPIFAFVLLAGGLLGCSNSGADQASSKEEKVDLNSPLDLSWMVILYHQQPPKDTAIKKIEELTNTKLDLMWVPDA
VKEDRLNSALAAGNLPKVVTIQDIKNSSVMNAFRSGMFWEVGPYLKDYPNLSKMNKLINKNASIDGKLYGIYRERPLSRQ
GIVIRKDWLDNLGLDMPKTVDELYETAKAFTEKDPDQNGKNDTIGFADRNDLIYGAFKTLGSYMGMPTDWEEKDGKFTPD
FMTKEYMDTMKYMKKLYDEGLINKDFPVTSKTQQQEMFSQGKAGIYVGNMVDAVNLRDQSVDDKMELEIINRIKGPDGKE
RVWASGGHNGIFAFPKTSVKTEKELKRILAFFDRIAEEDVYSLMTYGIEGVHYKKEGNKQFKRIDEKLKDWQAEIQPLVS
LVGIDKQYLKNTGDPLRTKYEELTEDNNEIIVSNPAESLYSPAASERGDELQKIIDDATYQFILGKINESQFEKAVEKWR
TNGGNQVIEEYEESFKKAEK

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 57074; Mature: 56943

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKKWLIPIFAFVLLAGGLLGCSNSGADQASSKEEKVDLNSPLDLSWMVILYHQQPPKDT
CCCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCHH
AIKKIEELTNTKLDLMWVPDAVKEDRLNSALAAGNLPKVVTIQDIKNSSVMNAFRSGMFW
HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCE
EVGPYLKDYPNLSKMNKLINKNASIDGKLYGIYRERPLSRQGIVIRKDWLDNLGLDMPKT
ECCCHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEHHHHHHCCCCCCHH
VDELYETAKAFTEKDPDQNGKNDTIGFADRNDLIYGAFKTLGSYMGMPTDWEEKDGKFTP
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
DFMTKEYMDTMKYMKKLYDEGLINKDFPVTSKTQQQEMFSQGKAGIYVGNMVDAVNLRDQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCHHHHCCCCCC
SVDDKMELEIINRIKGPDGKERVWASGGHNGIFAFPKTSVKTEKELKRILAFFDRIAEED
CCCHHHHHHHHHHHCCCCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VYSLMTYGIEGVHYKKEGNKQFKRIDEKLKDWQAEIQPLVSLVGIDKQYLKNTGDPLRTK
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHH
YEELTEDNNEIIVSNPAESLYSPAASERGDELQKIIDDATYQFILGKINESQFEKAVEKW
HHHHCCCCCEEEEECCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RTNGGNQVIEEYEESFKKAEK
HCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GKKWLIPIFAFVLLAGGLLGCSNSGADQASSKEEKVDLNSPLDLSWMVILYHQQPPKDT
CCCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEEEECCCCCHH
AIKKIEELTNTKLDLMWVPDAVKEDRLNSALAAGNLPKVVTIQDIKNSSVMNAFRSGMFW
HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCE
EVGPYLKDYPNLSKMNKLINKNASIDGKLYGIYRERPLSRQGIVIRKDWLDNLGLDMPKT
ECCCHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEHHHHHHCCCCCCHH
VDELYETAKAFTEKDPDQNGKNDTIGFADRNDLIYGAFKTLGSYMGMPTDWEEKDGKFTP
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH
DFMTKEYMDTMKYMKKLYDEGLINKDFPVTSKTQQQEMFSQGKAGIYVGNMVDAVNLRDQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCHHHHCCCCCC
SVDDKMELEIINRIKGPDGKERVWASGGHNGIFAFPKTSVKTEKELKRILAFFDRIAEED
CCCHHHHHHHHHHHCCCCCCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
VYSLMTYGIEGVHYKKEGNKQFKRIDEKLKDWQAEIQPLVSLVGIDKQYLKNTGDPLRTK
HHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHH
YEELTEDNNEIIVSNPAESLYSPAASERGDELQKIIDDATYQFILGKINESQFEKAVEKW
HHHHCCCCCEEEEECCHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RTNGGNQVIEEYEESFKKAEK
HCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]