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The map label for this gene is ytrP [H]

Identifier: 52786835

GI number: 52786835

Start: 2993647

End: 2995347

Strand: Reverse

Name: ytrP [H]

Synonym: BLi03109

Alternate gene names: 52786835

Gene position: 2995347-2993647 (Counterclockwise)

Preceding gene: 52786837

Following gene: 52786833

Centisome position: 70.94

GC content: 44.8

Gene sequence:

>1701_bases
ATGAATAAACAAACTGAAGACCTATATCTGACTTTTCATCAAAAGCTGTTTCAATTTTTTTTAAAAAAGCCGGCCGTCTC
GTACGACGACTCTGTTGCCTGGCTAAAAGCGGCAGCAGAGTCATTTTTTTCGTTTATATCTCTAACAGTGCAGCCTTCTT
CAAGACTGCAGGGATCGAGAGGCGACGGTGATCCGATCAGACGAGTGAGCGATTATCATACCATTATAACAATAGAAGAA
AACAGCAAATATATAGAACTTTCATGTCAAAAGAAACATAAATTACCAGAACGTCTCGCGGAATCCATTCATCTGTTTTT
GGTGCATTGTCTGGAGCTTGACGCATTATTTCGTGATGAGCTTAAGAAAACAAAGATTTATGAAAAGACGGAGCTGCTGC
ATGAGCTGATGGATCAGGAGCAGGTGCTGAAGACAATGCTCGAAAGCTTAAGGAGTGTGTTTCCTTTTTTAACGTATTGT
CTTTTCTTGTCATACGATGAGGATCAATACATCAACCTCCCTGCGATAGAGTTGGATGTGCAAAGCGAATCGACCGATTC
TTTTGCCTTGGAGGCATACTTATCAGGACAGGAGAAGAGCAAAAATGAAGCGGAAGTATACATTCCGATTAAAGGCCGGC
AGGGAACGTACGGCGTTTTGAAAGCCTTTGGACCAGGCGCTGCCGATACGGCAGCGGATATATGCATTATTTCGAATGCG
GCAGGGAAAGCATTTGAAAATTCACGGCTTTACGAACAGTCGCAGAATATGATTTCAAATTTGGAGCTGATTAATGAAAC
ATCGCATCAGCTGAACCGGACGAAACGCCTTCCGGATATGATGAAGAGCTTGTCCGAAAGGCTGATCAGTTCATTCGGCG
CCGAAGAGGTGGGCTTTTTTTATAAAAATCACTTAGGAAAGGAAACCCTGCTGCCGGAAAGCACTAGTTTTTTTCAGACG
GATGAGGCCCTTCCATACATCCGCTATGTCAAAGAGAAGATATCAGAGGAAAACGGGGTGTTTGTCGGAAACGGTTCTTC
GCTTTTTGGGAATGAAGGATATGCTTCATTAATGGGCGTTCCGATGCTGGAAAATAATGAAAACAAAGGGTTTGTCATCG
TGTTGAAAAAAAACGTCTGCTCCTTTTCGTTTGAGATGTTTAAGCTGTTTCAGACGCTGATCAGGCATTCCACGCTCGCC
GTATCGAATTTGATGCTGCGCGACCGGCTGAAGTATCTTGTTCAGACAGACCGTTTGACAGAGCTCTACTCGAGAAGCCA
TCTCGATGAGAAAATCGGGTACAGTATGAAATTGGACGAGAGCGGCGTCCTCGTATTGATCGATATCGATGATTTTAAAC
AGATTAACGATACGTACGGCCATCAGAAAGGCGATGATATTCTTATACAAGTCGCCCGGGTGATCCAGCGAAACATCCGC
GATCAGGATGTCGCAGCAAGGTGGGGAGGAGAAGAGCTTGCGGTATACTTGCCGAAAGCAAGGCTGAACGCCGGTGAAAT
GCTTGCCGAAAGGCTCATAATGCTTGTCAGGGAATGTACGGATCCGACGGTGACGATTTCGTGCGGGGTATCCCATTGGT
CTCAGGATCGTCCGAAATCTTTATCCGACCTTTTTAAAGAAGCGGATGTCGCGCTGTACAATGCAAAGCGGAACGGGAAA
AACAAGTTTATGACACATTAA

Upstream 100 bases:

>100_bases
CGTCCCGAAAGGAACGGACTGTTTATAAGTATATAGTCCTGTTTTTGTGATATAATCAGGAAAATAAAATACAAAAAACG
GATTTTTTAAGGTGATGACC

Downstream 100 bases:

>100_bases
AAAAGAGCCGGAATTACCGGCTCTTTTCGCTTAAACGCTCTCCAAGCTTCTCCGTGAACTTTTTCAAATAATACTCATCA
GTTTCATCGAAGCGGTTTTT

Product: YtrP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MNKQTEDLYLTFHQKLFQFFLKKPAVSYDDSVAWLKAAAESFFSFISLTVQPSSRLQGSRGDGDPIRRVSDYHTIITIEE
NSKYIELSCQKKHKLPERLAESIHLFLVHCLELDALFRDELKKTKIYEKTELLHELMDQEQVLKTMLESLRSVFPFLTYC
LFLSYDEDQYINLPAIELDVQSESTDSFALEAYLSGQEKSKNEAEVYIPIKGRQGTYGVLKAFGPGAADTAADICIISNA
AGKAFENSRLYEQSQNMISNLELINETSHQLNRTKRLPDMMKSLSERLISSFGAEEVGFFYKNHLGKETLLPESTSFFQT
DEALPYIRYVKEKISEENGVFVGNGSSLFGNEGYASLMGVPMLENNENKGFVIVLKKNVCSFSFEMFKLFQTLIRHSTLA
VSNLMLRDRLKYLVQTDRLTELYSRSHLDEKIGYSMKLDESGVLVLIDIDDFKQINDTYGHQKGDDILIQVARVIQRNIR
DQDVAARWGGEELAVYLPKARLNAGEMLAERLIMLVRECTDPTVTISCGVSHWSQDRPKSLSDLFKEADVALYNAKRNGK
NKFMTH

Sequences:

>Translated_566_residues
MNKQTEDLYLTFHQKLFQFFLKKPAVSYDDSVAWLKAAAESFFSFISLTVQPSSRLQGSRGDGDPIRRVSDYHTIITIEE
NSKYIELSCQKKHKLPERLAESIHLFLVHCLELDALFRDELKKTKIYEKTELLHELMDQEQVLKTMLESLRSVFPFLTYC
LFLSYDEDQYINLPAIELDVQSESTDSFALEAYLSGQEKSKNEAEVYIPIKGRQGTYGVLKAFGPGAADTAADICIISNA
AGKAFENSRLYEQSQNMISNLELINETSHQLNRTKRLPDMMKSLSERLISSFGAEEVGFFYKNHLGKETLLPESTSFFQT
DEALPYIRYVKEKISEENGVFVGNGSSLFGNEGYASLMGVPMLENNENKGFVIVLKKNVCSFSFEMFKLFQTLIRHSTLA
VSNLMLRDRLKYLVQTDRLTELYSRSHLDEKIGYSMKLDESGVLVLIDIDDFKQINDTYGHQKGDDILIQVARVIQRNIR
DQDVAARWGGEELAVYLPKARLNAGEMLAERLIMLVRECTDPTVTISCGVSHWSQDRPKSLSDLFKEADVALYNAKRNGK
NKFMTH
>Mature_566_residues
MNKQTEDLYLTFHQKLFQFFLKKPAVSYDDSVAWLKAAAESFFSFISLTVQPSSRLQGSRGDGDPIRRVSDYHTIITIEE
NSKYIELSCQKKHKLPERLAESIHLFLVHCLELDALFRDELKKTKIYEKTELLHELMDQEQVLKTMLESLRSVFPFLTYC
LFLSYDEDQYINLPAIELDVQSESTDSFALEAYLSGQEKSKNEAEVYIPIKGRQGTYGVLKAFGPGAADTAADICIISNA
AGKAFENSRLYEQSQNMISNLELINETSHQLNRTKRLPDMMKSLSERLISSFGAEEVGFFYKNHLGKETLLPESTSFFQT
DEALPYIRYVKEKISEENGVFVGNGSSLFGNEGYASLMGVPMLENNENKGFVIVLKKNVCSFSFEMFKLFQTLIRHSTLA
VSNLMLRDRLKYLVQTDRLTELYSRSHLDEKIGYSMKLDESGVLVLIDIDDFKQINDTYGHQKGDDILIQVARVIQRNIR
DQDVAARWGGEELAVYLPKARLNAGEMLAERLIMLVRECTDPTVTISCGVSHWSQDRPKSLSDLFKEADVALYNAKRNGK
NKFMTH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=35.9281437125749, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082007, Length=193, Percent_Identity=35.7512953367876, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=35.3591160220994, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=165, Percent_Identity=32.1212121212121, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=35.1851851851852, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=32.5153374233129, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788085, Length=194, Percent_Identity=29.8969072164948, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=29.6511627906977, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=30.952380952381, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=31.7880794701987, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=32.6923076923077, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=150, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 64617; Mature: 64617

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQTEDLYLTFHQKLFQFFLKKPAVSYDDSVAWLKAAAESFFSFISLTVQPSSRLQGSR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEECCHHHCCCCC
GDGDPIRRVSDYHTIITIEENSKYIELSCQKKHKLPERLAESIHLFLVHCLELDALFRDE
CCCCHHHHHCCCEEEEEEECCCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKKTKIYEKTELLHELMDQEQVLKTMLESLRSVFPFLTYCLFLSYDEDQYINLPAIELDV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEE
QSESTDSFALEAYLSGQEKSKNEAEVYIPIKGRQGTYGVLKAFGPGAADTAADICIISNA
CCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCEEEEECC
AGKAFENSRLYEQSQNMISNLELINETSHQLNRTKRLPDMMKSLSERLISSFGAEEVGFF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YKNHLGKETLLPESTSFFQTDEALPYIRYVKEKISEENGVFVGNGSSLFGNEGYASLMGV
HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCC
PMLENNENKGFVIVLKKNVCSFSFEMFKLFQTLIRHSTLAVSNLMLRDRLKYLVQTDRLT
CEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELYSRSHLDEKIGYSMKLDESGVLVLIDIDDFKQINDTYGHQKGDDILIQVARVIQRNIR
HHHHHHCCHHHCCCEEEECCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
DQDVAARWGGEELAVYLPKARLNAGEMLAERLIMLVRECTDPTVTISCGVSHWSQDRPKS
CHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH
LSDLFKEADVALYNAKRNGKNKFMTH
HHHHHHHHCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MNKQTEDLYLTFHQKLFQFFLKKPAVSYDDSVAWLKAAAESFFSFISLTVQPSSRLQGSR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEECCHHHCCCCC
GDGDPIRRVSDYHTIITIEENSKYIELSCQKKHKLPERLAESIHLFLVHCLELDALFRDE
CCCCHHHHHCCCEEEEEEECCCCEEEEECHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKKTKIYEKTELLHELMDQEQVLKTMLESLRSVFPFLTYCLFLSYDEDQYINLPAIELDV
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEE
QSESTDSFALEAYLSGQEKSKNEAEVYIPIKGRQGTYGVLKAFGPGAADTAADICIISNA
CCCCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCEEEEECC
AGKAFENSRLYEQSQNMISNLELINETSHQLNRTKRLPDMMKSLSERLISSFGAEEVGFF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YKNHLGKETLLPESTSFFQTDEALPYIRYVKEKISEENGVFVGNGSSLFGNEGYASLMGV
HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHCC
PMLENNENKGFVIVLKKNVCSFSFEMFKLFQTLIRHSTLAVSNLMLRDRLKYLVQTDRLT
CEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELYSRSHLDEKIGYSMKLDESGVLVLIDIDDFKQINDTYGHQKGDDILIQVARVIQRNIR
HHHHHHCCHHHCCCEEEECCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
DQDVAARWGGEELAVYLPKARLNAGEMLAERLIMLVRECTDPTVTISCGVSHWSQDRPKS
CHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH
LSDLFKEADVALYNAKRNGKNKFMTH
HHHHHHHHCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]