Click here to switch to the map view.

The map label for this gene is yxaD [H]

Identifier: 52786823

GI number: 52786823

Start: 2981893

End: 2982321

Strand: Reverse

Name: yxaD [H]

Synonym: BLi03097

Alternate gene names: 52786823

Gene position: 2982321-2981893 (Counterclockwise)

Preceding gene: 52786824

Following gene: 52786822

Centisome position: 70.63

GC content: 48.25

Gene sequence:

>429_bases
TTGGGTCATGACTCACTCCGAAACATAGAGAAAGAAATCGCGCTTTTGGTCCGTCTGACGACGGCCTACAGCCCGCGCTT
TGGAAGTCTGGACCGCTCGGAATATCTGCTGTTAAGCGAGCTTGATAAGCAAAGTCCTCTCGCCATCAACTCGCTGGCTG
AAACCTTAATGCTGAATCTGTCGACAGCAAGCAGACAAGTTTCAGCCTTGGAACGGAAAAAGCTCATCAGACGTTTTCCT
GATCCCAACAACGGCCGGATCAGCCTTGTGGAGATGACTTCGGAGGGCATTGATGCTCTGAAAAAAGTGCAAAAGGCCCG
CTATCATGTATACACGGAGGTTCTTCAAGACTGGACAACAGAAGAACTGAACACGTTGGAAACCCGCTTGATCAGACTGA
ATCAGGATTTTAAAAAGTGGAGCAAATAA

Upstream 100 bases:

>100_bases
AAAACGCCTTCGGCGAAAATCAAGCGCTTTGAACTAAGACAACGGGAAATCGCACTTAAAACGAAAGCTGAATAACCACA
CAAAGAGGAGGGAATATCCG

Downstream 100 bases:

>100_bases
GCGGCTAAAGGCTGGTTGGTCAGACGATCATCAGCCTTTTCTTTTTCTTTCGGTTGAATTATTGCGGGAAGGATGTATAA
TTTAACTTGCATAATACAAC

Product: YxaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MGHDSLRNIEKEIALLVRLTTAYSPRFGSLDRSEYLLLSELDKQSPLAINSLAETLMLNLSTASRQVSALERKKLIRRFP
DPNNGRISLVEMTSEGIDALKKVQKARYHVYTEVLQDWTTEELNTLETRLIRLNQDFKKWSK

Sequences:

>Translated_142_residues
MGHDSLRNIEKEIALLVRLTTAYSPRFGSLDRSEYLLLSELDKQSPLAINSLAETLMLNLSTASRQVSALERKKLIRRFP
DPNNGRISLVEMTSEGIDALKKVQKARYHVYTEVLQDWTTEELNTLETRLIRLNQDFKKWSK
>Mature_141_residues
GHDSLRNIEKEIALLVRLTTAYSPRFGSLDRSEYLLLSELDKQSPLAINSLAETLMLNLSTASRQVSALERKKLIRRFPD
PNNGRISLVEMTSEGIDALKKVQKARYHVYTEVLQDWTTEELNTLETRLIRLNQDFKKWSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16421; Mature: 16290

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHDSLRNIEKEIALLVRLTTAYSPRFGSLDRSEYLLLSELDKQSPLAINSLAETLMLNL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
STASRQVSALERKKLIRRFPDPNNGRISLVEMTSEGIDALKKVQKARYHVYTEVLQDWTT
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCH
EELNTLETRLIRLNQDFKKWSK
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GHDSLRNIEKEIALLVRLTTAYSPRFGSLDRSEYLLLSELDKQSPLAINSLAETLMLNL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
STASRQVSALERKKLIRRFPDPNNGRISLVEMTSEGIDALKKVQKARYHVYTEVLQDWTT
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCH
EELNTLETRLIRLNQDFKKWSK
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]