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The map label for this gene is ytcD [H]

Identifier: 52786574

GI number: 52786574

Start: 2725971

End: 2726348

Strand: Direct

Name: ytcD [H]

Synonym: BLi02840

Alternate gene names: 52786574

Gene position: 2725971-2726348 (Clockwise)

Preceding gene: 52786571

Following gene: 52786575

Centisome position: 64.56

GC content: 48.68

Gene sequence:

>378_bases
ATGAAGCCGAAAAAGTATAATATATCTGTCGAAGCTACACTTGAAGTGATCGGCGGGAAATGGAAATGCGTGATTTTGTG
TCACTTGACGCACGGCAAAAAACGCACGAGCGAGCTCAAGCGGCTGATGCCGAACATTACGCAGAAAATGCTGACCCAGC
AGCTGCGCGAACTGGAGGAGGACGGCGTCATCAACCGGATCGTGTACCAGCAGGTGCCGCCGAAGGTCGAATACGAACTC
AGCGAATACGGATGGACGCTTAAAGACATTTTGGATTCGCTGTGCTCCTGGGGCGAAAAACACATTACAAAAGTGTATGG
AGACAAATTTGCTGTTTTGGAGGACAGCGTGCTGAATGAACAATTACAGGAAACATGA

Upstream 100 bases:

>100_bases
TGGTACATATCATCTGCGAAAAAAAGTACGCACTTTTAAGTGTGATAGGAACCAAAAAGTGAGATAGGTACTTTTCGGTA
CCTATGGATTGGAGGAGAAC

Downstream 100 bases:

>100_bases
TAAATAAGTGGAGGTCAGGATGGGAAAATGGTTTCTTTCCGGAGGCGGAGATGCACACCAAACCGAACAGCTGGATCGGC
ATTTTGCCCGGAGCATCTGT

Product: YtcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKPKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEEDGVINRIVYQQVPPKVEYEL
SEYGWTLKDILDSLCSWGEKHITKVYGDKFAVLEDSVLNEQLQET

Sequences:

>Translated_125_residues
MKPKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEEDGVINRIVYQQVPPKVEYEL
SEYGWTLKDILDSLCSWGEKHITKVYGDKFAVLEDSVLNEQLQET
>Mature_125_residues
MKPKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEEDGVINRIVYQQVPPKVEYEL
SEYGWTLKDILDSLCSWGEKHITKVYGDKFAVLEDSVLNEQLQET

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=95, Percent_Identity=36.8421052631579, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14536; Mature: 14536

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEE
CCCCEEEEEHHHHHEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGVINRIVYQQVPPKVEYELSEYGWTLKDILDSLCSWGEKHITKVYGDKFAVLEDSVLNE
CCHHHHHHHHHCCCCCEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
QLQET
HHHCC
>Mature Secondary Structure
MKPKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPNITQKMLTQQLRELEE
CCCCEEEEEHHHHHEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DGVINRIVYQQVPPKVEYELSEYGWTLKDILDSLCSWGEKHITKVYGDKFAVLEDSVLNE
CCHHHHHHHHHCCCCCEEEHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
QLQET
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]