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The map label for this gene is virS [H]

Identifier: 52786553

GI number: 52786553

Start: 2703148

End: 2704155

Strand: Direct

Name: virS [H]

Synonym: BLi02818

Alternate gene names: 52786553

Gene position: 2703148-2704155 (Clockwise)

Preceding gene: 52786552

Following gene: 52786554

Centisome position: 64.02

GC content: 54.37

Gene sequence:

>1008_bases
ATGTCTCATACTCGAATTAAATTCCCGGCAGGATTTTGGGCAGGATTGCGTCAATTAGGAATTAACGCCCCTGATGTGCT
TCGAAAAGCCCGGCTGCCGCTCACCGTGATGACTGAACCAGTTGTCACCGCCGCCCAATACTTCGCGATCTGGCAGGCGT
ATTCCGACCTTGTTGATGACGTTTCCAAAGGAATCATCAAGCTTGCGACCGGCTTTGAGCCGGCACATTACCCTCCGGCC
GTATTAGCGGCTTACCATGCCCGTGACTACCGCGGCGCGCTAAAACGAATGGCCCGCTACAAACAATTATGCCCTCCTGA
AAGCCTGCGTATCACCGAAGAAGATGAGCACTGCGCAATCGAACTGGAATGGTTGGATGATAAGCTACCCGGTCCGCCGC
TCTTGATTGGCATTACACTGGCATTTCTTCTGGAACTCGGGCGCCGGGGCACAGGTCAGCCGTTGACAGCGAAGTCGGTC
GAGTTTGCACACCCAATGGGCGACATGCAGGCGCTTGAAGCATACTTCGGCTGCCGCATCCGGAGCGGTGCAGCTCGGAA
CCGGCTGACGCTGAATCGAGGAGATCTTGACCGCCCTTTTGTCTCGTATAACGCGGAGTTGCTGGAGATTTTGACTCCCG
TGCTGGATCAATCGTTGAATGATCAGCAAAATAGCCTTTCAATCAGCGGAGCGGTCAAGTGGATCATGAAACGCACGCTT
CCAGGAGGGCACCCCGACATTCAGACTGTTGCGAGCGAGTTGGGAATGAGCGGCCGCACCTTGCAGCGCCGGCTTACTGA
CGAAGGCACTAGCTTCAAACAGCTGTTGATCCAAGTCAGACATGAGCAGGCGCGGGAGTACTTGGCAGACCCTTCGCTCG
ATATTAAAGAAGTGGCCATTCTGATCGGATATGAAGATCAGAACTCGTTCTACCGGGCCTTCCGCCTTTGGGAAGGCGAG
ACTCCTTCTAATTGGCGTAAGAAGACCCGGCTGAATGGATTTAACTAG

Upstream 100 bases:

>100_bases
TCGACAATGGTTAGGTAAAGTTATAACTGTCCCGCCAACAAGGCTGGACAGAATGACGACCAAACGAGCGAAGGTGCAGA
AAGTTAAAGGAGTGCTCAAG

Downstream 100 bases:

>100_bases
AATAGGAGAAATGTTTAATGGATATGGGATTAAAAAATAAAACAGCTTTAGTTACCGGATCGACGAAAGGTATAGGAAAA
GCCATCGCTATTGAACTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MSHTRIKFPAGFWAGLRQLGINAPDVLRKARLPLTVMTEPVVTAAQYFAIWQAYSDLVDDVSKGIIKLATGFEPAHYPPA
VLAAYHARDYRGALKRMARYKQLCPPESLRITEEDEHCAIELEWLDDKLPGPPLLIGITLAFLLELGRRGTGQPLTAKSV
EFAHPMGDMQALEAYFGCRIRSGAARNRLTLNRGDLDRPFVSYNAELLEILTPVLDQSLNDQQNSLSISGAVKWIMKRTL
PGGHPDIQTVASELGMSGRTLQRRLTDEGTSFKQLLIQVRHEQAREYLADPSLDIKEVAILIGYEDQNSFYRAFRLWEGE
TPSNWRKKTRLNGFN

Sequences:

>Translated_335_residues
MSHTRIKFPAGFWAGLRQLGINAPDVLRKARLPLTVMTEPVVTAAQYFAIWQAYSDLVDDVSKGIIKLATGFEPAHYPPA
VLAAYHARDYRGALKRMARYKQLCPPESLRITEEDEHCAIELEWLDDKLPGPPLLIGITLAFLLELGRRGTGQPLTAKSV
EFAHPMGDMQALEAYFGCRIRSGAARNRLTLNRGDLDRPFVSYNAELLEILTPVLDQSLNDQQNSLSISGAVKWIMKRTL
PGGHPDIQTVASELGMSGRTLQRRLTDEGTSFKQLLIQVRHEQAREYLADPSLDIKEVAILIGYEDQNSFYRAFRLWEGE
TPSNWRKKTRLNGFN
>Mature_334_residues
SHTRIKFPAGFWAGLRQLGINAPDVLRKARLPLTVMTEPVVTAAQYFAIWQAYSDLVDDVSKGIIKLATGFEPAHYPPAV
LAAYHARDYRGALKRMARYKQLCPPESLRITEEDEHCAIELEWLDDKLPGPPLLIGITLAFLLELGRRGTGQPLTAKSVE
FAHPMGDMQALEAYFGCRIRSGAARNRLTLNRGDLDRPFVSYNAELLEILTPVLDQSLNDQQNSLSISGAVKWIMKRTLP
GGHPDIQTVASELGMSGRTLQRRLTDEGTSFKQLLIQVRHEQAREYLADPSLDIKEVAILIGYEDQNSFYRAFRLWEGET
PSNWRKKTRLNGFN

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37735; Mature: 37604

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS01124 HTH_ARAC_FAMILY_2 ; PS00636 DNAJ_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHTRIKFPAGFWAGLRQLGINAPDVLRKARLPLTVMTEPVVTAAQYFAIWQAYSDLVDD
CCCCEEECCCHHHHHHHHHCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
VSKGIIKLATGFEPAHYPPAVLAAYHARDYRGALKRMARYKQLCPPESLRITEEDEHCAI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEE
ELEWLDDKLPGPPLLIGITLAFLLELGRRGTGQPLTAKSVEFAHPMGDMQALEAYFGCRI
EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCEE
RSGAARNRLTLNRGDLDRPFVSYNAELLEILTPVLDQSLNDQQNSLSISGAVKWIMKRTL
CCCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHCEEHHHHHHHHHHHHC
PGGHPDIQTVASELGMSGRTLQRRLTDEGTSFKQLLIQVRHEQAREYLADPSLDIKEVAI
CCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEE
LIGYEDQNSFYRAFRLWEGETPSNWRKKTRLNGFN
EEEECCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
SHTRIKFPAGFWAGLRQLGINAPDVLRKARLPLTVMTEPVVTAAQYFAIWQAYSDLVDD
CCCEEECCCHHHHHHHHHCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
VSKGIIKLATGFEPAHYPPAVLAAYHARDYRGALKRMARYKQLCPPESLRITEEDEHCAI
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEE
ELEWLDDKLPGPPLLIGITLAFLLELGRRGTGQPLTAKSVEFAHPMGDMQALEAYFGCRI
EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCEE
RSGAARNRLTLNRGDLDRPFVSYNAELLEILTPVLDQSLNDQQNSLSISGAVKWIMKRTL
CCCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHCEEHHHHHHHHHHHHC
PGGHPDIQTVASELGMSGRTLQRRLTDEGTSFKQLLIQVRHEQAREYLADPSLDIKEVAI
CCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEE
LIGYEDQNSFYRAFRLWEGETPSNWRKKTRLNGFN
EEEECCCHHHHHHHHHCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]