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The map label for this gene is tdcF [C]

Identifier: 52786511

GI number: 52786511

Start: 2668036

End: 2668425

Strand: Reverse

Name: tdcF [C]

Synonym: BLi02776

Alternate gene names: 52786511

Gene position: 2668425-2668036 (Counterclockwise)

Preceding gene: 52786512

Following gene: 52786510

Centisome position: 63.19

GC content: 44.1

Gene sequence:

>390_bases
TTGAAGCCTGTACACACGAAGTATTCAACACGGGATGGGGGCCATTACGTGCCAGCTATGGAACACAATGATGTTCTCTA
TATTTCAGGGCAGTTGTCGATGAATCCAGAAACGGGAAAAATTCCAGCTGGGGGCATAAAAGAAGAAGCAAAACAGGCAT
TGGCAAATATGGAGCTTGTCCTCAAGGAACGGGGATTAGCCAAGGAAGATGTGATATTATGCAGACTTTATACCCCAGAT
GTAAAGTATTGGCCGGATATCAATGAGGTCTATGCTCATTTCTTCGGCAATCATAAACCGGCAAGAGTAGTTGTTCCATC
AAATCATTTATATGCCGGGTGTCTTGTTGAAGTTGAAGCCATTGCAGCGATAAAGGAGGAGGCACAATGA

Upstream 100 bases:

>100_bases
CAGTAAGAAAGCAAGGATCAAACTCGCTGTTTTGCTGGCTGCTGGACAGAAGATTGATGAGGCTAGCTTTAAATATTAAG
AATAATAGGGGGAGATTATA

Downstream 100 bases:

>100_bases
ATGATTTACAATTAGATACACCAGCTCTTTTAATCGATAAAGACGTGATGTTAAGCAATATGAAGGATATGCAAAATTAC
GCTAACGAACAGAAGGTAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKPVHTKYSTRDGGHYVPAMEHNDVLYISGQLSMNPETGKIPAGGIKEEAKQALANMELVLKERGLAKEDVILCRLYTPD
VKYWPDINEVYAHFFGNHKPARVVVPSNHLYAGCLVEVEAIAAIKEEAQ

Sequences:

>Translated_129_residues
MKPVHTKYSTRDGGHYVPAMEHNDVLYISGQLSMNPETGKIPAGGIKEEAKQALANMELVLKERGLAKEDVILCRLYTPD
VKYWPDINEVYAHFFGNHKPARVVVPSNHLYAGCLVEVEAIAAIKEEAQ
>Mature_129_residues
MKPVHTKYSTRDGGHYVPAMEHNDVLYISGQLSMNPETGKIPAGGIKEEAKQALANMELVLKERGLAKEDVILCRLYTPD
VKYWPDINEVYAHFFGNHKPARVVVPSNHLYAGCLVEVEAIAAIKEEAQ

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=109, Percent_Identity=36.697247706422, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=31.4516129032258, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI87082396, Length=124, Percent_Identity=29.8387096774194, Blast_Score=67, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=113, Percent_Identity=32.7433628318584, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=113, Percent_Identity=32.7433628318584, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=109, Percent_Identity=33.0275229357798, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=32, Blast_Score=73, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=104, Percent_Identity=33.6538461538462, Blast_Score=70, Evalue=8e-14,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=32.2314049586777, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14376; Mature: 14376

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVHTKYSTRDGGHYVPAMEHNDVLYISGQLSMNPETGKIPAGGIKEEAKQALANMELV
CCCCCCCCCCCCCCEECCCCCCCCEEEEECEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LKERGLAKEDVILCRLYTPDVKYWPDINEVYAHFFGNHKPARVVVPSNHLYAGCLVEVEA
HHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEHHHHHHH
IAAIKEEAQ
HHHHHHHCC
>Mature Secondary Structure
MKPVHTKYSTRDGGHYVPAMEHNDVLYISGQLSMNPETGKIPAGGIKEEAKQALANMELV
CCCCCCCCCCCCCCEECCCCCCCCEEEEECEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LKERGLAKEDVILCRLYTPDVKYWPDINEVYAHFFGNHKPARVVVPSNHLYAGCLVEVEA
HHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEHHHHHHH
IAAIKEEAQ
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]