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The map label for this gene is ydfO [H]

Identifier: 52785779

GI number: 52785779

Start: 1970375

End: 1971313

Strand: Direct

Name: ydfO [H]

Synonym: BLi02024

Alternate gene names: 52785779

Gene position: 1970375-1971313 (Clockwise)

Preceding gene: 52785778

Following gene: 52785780

Centisome position: 46.66

GC content: 40.47

Gene sequence:

>939_bases
ATGAAAAAGAAAACAAGCGGAATCCATCACATTACCGCGATTGTCGGCCATCCGCAAGAGAATGTCGATTTTTACGCTGG
CGTTCTAGGTTTACGTTTAGTGAAAAAAACTGTTAATTTTGATGATCCGGGAACATACCACCTGTATTTCGGTAATGAAG
GCGGAAAACCGGGAACGATTATTACATTCTTTCCATGGGTGGGTGCTCGCCGAGGAGTCATTGGAGATGGCCAGGTGGGA
GTTACTTCATACGTCGTTCCTAAAGGCGCAATGGCATTTTGGGAAAACAGATTGGCAAAATTTAATTTGCCTTATACAAA
AATGAACCGTTTTGGAGAGGAGTACTTAGAGTTCGATGATCCTCATGGACTTCATCTGGAAATTGTCGAAAGAGAAGAAG
GGGAAAAGAACAGCTGGAAGATAGGAGAAATTACACCGGACAAAGCAATCAAAGGATTTGGCGGAGCAACACTTTTATCC
AAACAACCGGAAAAAACGGCTGAATTATTAGAAAAGGTTATGGGACTTGAAAAAGTTGGTGAAGAAGGAGATTTTGTACG
TTTTCGTTCTTCTGGTGATATCGGGAATATAATTGATTTGAAATTAACAACTATAGGCAGCGGACAAATGGGGATTGGTA
CAGTTCACCATATTGCCTGGAGAGCTATTGATGACAATGATCAATTAGAATGGCAAAAATATGTTGCAGAAAATGGTTAT
CGTGTTACACCCGTGCAAGACAGAAATTATTTTAACGCGATTTATTTTAGAGAACACGGGGAGATTTTATTTGAAATTGC
AACAGATCCTCCAGGGTTCGCCCATGATGAATCACATCAAACAATGGGAGAACAGTTAATGTTGCCGGCTCAGTATGAAC
ACTACAGAGAGCAGTTAGAAAGAAGATTAATTCCTATAACAGTGAAGGCGCTGGATTAA

Upstream 100 bases:

>100_bases
TAGAAAGCAGAAAACCGCGGGGATTTAGAAAACCTGTAAATGAATTTGTAACCTATATCTCTTAATAAAGCTATGTTTCA
TGAAAGAGGAGTGAAATGAT

Downstream 100 bases:

>100_bases
TTTTTGCACGGAAGTGATTCAATGCTGTCCATTGATCCGCTTACAAAAACGGAAAGAGAGAACTACAAGTTTTTAATCGG
GAGTATCATACCAAGACCCG

Product: YdfO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MKKKTSGIHHITAIVGHPQENVDFYAGVLGLRLVKKTVNFDDPGTYHLYFGNEGGKPGTIITFFPWVGARRGVIGDGQVG
VTSYVVPKGAMAFWENRLAKFNLPYTKMNRFGEEYLEFDDPHGLHLEIVEREEGEKNSWKIGEITPDKAIKGFGGATLLS
KQPEKTAELLEKVMGLEKVGEEGDFVRFRSSGDIGNIIDLKLTTIGSGQMGIGTVHHIAWRAIDDNDQLEWQKYVAENGY
RVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESHQTMGEQLMLPAQYEHYREQLERRLIPITVKALD

Sequences:

>Translated_312_residues
MKKKTSGIHHITAIVGHPQENVDFYAGVLGLRLVKKTVNFDDPGTYHLYFGNEGGKPGTIITFFPWVGARRGVIGDGQVG
VTSYVVPKGAMAFWENRLAKFNLPYTKMNRFGEEYLEFDDPHGLHLEIVEREEGEKNSWKIGEITPDKAIKGFGGATLLS
KQPEKTAELLEKVMGLEKVGEEGDFVRFRSSGDIGNIIDLKLTTIGSGQMGIGTVHHIAWRAIDDNDQLEWQKYVAENGY
RVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESHQTMGEQLMLPAQYEHYREQLERRLIPITVKALD
>Mature_312_residues
MKKKTSGIHHITAIVGHPQENVDFYAGVLGLRLVKKTVNFDDPGTYHLYFGNEGGKPGTIITFFPWVGARRGVIGDGQVG
VTSYVVPKGAMAFWENRLAKFNLPYTKMNRFGEEYLEFDDPHGLHLEIVEREEGEKNSWKIGEITPDKAIKGFGGATLLS
KQPEKTAELLEKVMGLEKVGEEGDFVRFRSSGDIGNIIDLKLTTIGSGQMGIGTVHHIAWRAIDDNDQLEWQKYVAENGY
RVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESHQTMGEQLMLPAQYEHYREQLERRLIPITVKALD

Specific function: Putative ring-cleavage dioxygenase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0346

COG function: function code E; Lactoylglutathione lyase and related lyases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the extradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004360 [H]

Pfam domain/function: PF00903 Glyoxalase [H]

EC number: NA

Molecular weight: Translated: 35239; Mature: 35239

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTSGIHHITAIVGHPQENVDFYAGVLGLRLVKKTVNFDDPGTYHLYFGNEGGKPGTI
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEE
ITFFPWVGARRGVIGDGQVGVTSYVVPKGAMAFWENRLAKFNLPYTKMNRFGEEYLEFDD
EEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCEEECCCHHHHHHHHHHHHCCCC
PHGLHLEIVEREEGEKNSWKIGEITPDKAIKGFGGATLLSKQPEKTAELLEKVMGLEKVG
CCCCEEEEEECCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
EEGDFVRFRSSGDIGNIIDLKLTTIGSGQMGIGTVHHIAWRAIDDNDQLEWQKYVAENGY
CCCCEEEEECCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCE
RVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESHQTMGEQLMLPAQYEHYREQLE
EEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHEECCHHHHHHHHHHH
RRLIPITVKALD
CCEEEEEEEECC
>Mature Secondary Structure
MKKKTSGIHHITAIVGHPQENVDFYAGVLGLRLVKKTVNFDDPGTYHLYFGNEGGKPGTI
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEE
ITFFPWVGARRGVIGDGQVGVTSYVVPKGAMAFWENRLAKFNLPYTKMNRFGEEYLEFDD
EEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCCEEECCCHHHHHHHHHHHHCCCC
PHGLHLEIVEREEGEKNSWKIGEITPDKAIKGFGGATLLSKQPEKTAELLEKVMGLEKVG
CCCCEEEEEECCCCCCCCEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
EEGDFVRFRSSGDIGNIIDLKLTTIGSGQMGIGTVHHIAWRAIDDNDQLEWQKYVAENGY
CCCCEEEEECCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCE
RVTPVQDRNYFNAIYFREHGEILFEIATDPPGFAHDESHQTMGEQLMLPAQYEHYREQLE
EEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHEECCHHHHHHHHHHH
RRLIPITVKALD
CCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]