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The map label for this gene is ynbA [H]

Identifier: 52785746

GI number: 52785746

Start: 1945018

End: 1946280

Strand: Direct

Name: ynbA [H]

Synonym: BLi01990

Alternate gene names: 52785746

Gene position: 1945018-1946280 (Clockwise)

Preceding gene: 52785745

Following gene: 52785747

Centisome position: 46.06

GC content: 49.33

Gene sequence:

>1263_bases
TTGAACGAACAGGAAGTCATGAAAGAGAAAGCCATATTAGTCGGATGCCAGCTTCCGCACGTGTCTGATGAGCGTTTTTC
ATACTCGATGGAAGAGCTCGCCGCGCTGACGAAAACGGCCGACGGAACGGTTGTTTCCACGGTCACGCAGAAGCGGAACC
GTGTGGATGCTGCTACATATATCGGAAAAGGAAAAGTAGATGAATTGGCGGTGCTCTGTGAAGAGCTGTCGCCCGATGTT
TTAATTTTTAATGATGAATTGTCGCCGAGTCAGCTGAAAGCGCTTGTCACAACGCTTGACGTGAAAATCATCGACCGGAC
GCAGTTGATCCTTGATATTTTCGCCAAACGCGCGAGGACAAGGGAAGGAAAGCTGCAAATTGAGCTGGCACAGCTGCAAT
ACGCCCTCCCGCGGTTAAGCGGCCAGGGAATCAACCTGTCAAGGCAAGGCGGAGGAATCGGAACAAGAGGTCCAGGGGAG
ACAAAGCTTGAAACCGACCGGCGCCATATCAGAAACCGGATTCATGAAATCAATGTTCAGCTGTCTACCGTCATTCGCCA
CAGAAGCAGATACAGAGAAAGAAGAAAGAAAAACGGTGTACTGCAAATCGCGCTTGTCGGCTACACCAATGCAGGGAAAT
CGACATGGTTTAACAGGCTTACAGACGCCGACAGCTATGAAGAAAACCTTTTGTTCGCCACACTTGACCCGATGACCCGC
AAAATGATGCTCCCGAGCGGATACAGCGTGCTGCTCTCGGATACAGTCGGGTTTATTCAGGATCTGCCGACAACTTTGAT
CGCGGCTTTCAGATCGACGCTCGAAGAGGTGAAAGAAGCCGATCTGATTCTTCATATGATCGATTCTTCTCACGAAGACT
ACGAGGGCCATGAGGAGACGGTCAAGCGCCTTCTTGAGGAACTTGAAGCAGACGATATTCCTGTTTTAACCGTCTATAAC
AAAAGAGACCGGAAGCGGCCTGATTTCATCCCTTCTTCAGGGAGAGGGCATATCATGACGAGCGCCAAAATAGACGGAGA
CTTGCCGCTGTTTAAGCAGGCGGTTGAAGACTATCTGAAAAAGGAGCTGCTCGTTCCGTATGACGTGAGAATTCCCGCTT
CAGAAGGAAGGCTGTTGTCGAGAATCAAGTCTGAGACAATGACGAACAGCACCGTTTTTGACGAAGATCGCGAAGCATAT
GAAGTGGAAGGATATATTCTCCCTGACCAAAACATTTTGGGAGAGCTGAAGAAGTATATGTAG

Upstream 100 bases:

>100_bases
CGCGTTCTTTTTTTATTTTCGAGGATTTCTGGCAACCGCTCCCTTCGTTTGTTATGATAGTACTGCTTATTGACTAACGT
TAAGAAAGGAACATGATCAC

Downstream 100 bases:

>100_bases
GAAAGGATACTGCAAAACATGTTTGAGACATTAAAACACGGAGATCTACTAAAGAAAACGGCGGTGGAGGCTGAAACCGA
CATCGCACAGATCCACAAAA

Product: YnbA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MNEQEVMKEKAILVGCQLPHVSDERFSYSMEELAALTKTADGTVVSTVTQKRNRVDAATYIGKGKVDELAVLCEELSPDV
LIFNDELSPSQLKALVTTLDVKIIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLSGQGINLSRQGGGIGTRGPGE
TKLETDRRHIRNRIHEINVQLSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTDADSYEENLLFATLDPMTR
KMMLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHMIDSSHEDYEGHEETVKRLLEELEADDIPVLTVYN
KRDRKRPDFIPSSGRGHIMTSAKIDGDLPLFKQAVEDYLKKELLVPYDVRIPASEGRLLSRIKSETMTNSTVFDEDREAY
EVEGYILPDQNILGELKKYM

Sequences:

>Translated_420_residues
MNEQEVMKEKAILVGCQLPHVSDERFSYSMEELAALTKTADGTVVSTVTQKRNRVDAATYIGKGKVDELAVLCEELSPDV
LIFNDELSPSQLKALVTTLDVKIIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLSGQGINLSRQGGGIGTRGPGE
TKLETDRRHIRNRIHEINVQLSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTDADSYEENLLFATLDPMTR
KMMLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHMIDSSHEDYEGHEETVKRLLEELEADDIPVLTVYN
KRDRKRPDFIPSSGRGHIMTSAKIDGDLPLFKQAVEDYLKKELLVPYDVRIPASEGRLLSRIKSETMTNSTVFDEDREAY
EVEGYILPDQNILGELKKYM
>Mature_420_residues
MNEQEVMKEKAILVGCQLPHVSDERFSYSMEELAALTKTADGTVVSTVTQKRNRVDAATYIGKGKVDELAVLCEELSPDV
LIFNDELSPSQLKALVTTLDVKIIDRTQLILDIFAKRARTREGKLQIELAQLQYALPRLSGQGINLSRQGGGIGTRGPGE
TKLETDRRHIRNRIHEINVQLSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTDADSYEENLLFATLDPMTR
KMMLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHMIDSSHEDYEGHEETVKRLLEELEADDIPVLTVYN
KRDRKRPDFIPSSGRGHIMTSAKIDGDLPLFKQAVEDYLKKELLVPYDVRIPASEGRLLSRIKSETMTNSTVFDEDREAY
EVEGYILPDQNILGELKKYM

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310124269, Length=208, Percent_Identity=35.5769230769231, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI310124267, Length=208, Percent_Identity=35.5769230769231, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI310124171, Length=208, Percent_Identity=35.5769230769231, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI310124169, Length=208, Percent_Identity=35.5769230769231, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI310133116, Length=216, Percent_Identity=35.1851851851852, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI310133118, Length=230, Percent_Identity=34.7826086956522, Blast_Score=101, Evalue=1e-21,
Organism=Escherichia coli, GI1790615, Length=394, Percent_Identity=40.6091370558376, Blast_Score=271, Evalue=6e-74,
Organism=Caenorhabditis elegans, GI17561038, Length=278, Percent_Identity=33.8129496402878, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24650079, Length=376, Percent_Identity=27.6595744680851, Blast_Score=113, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47602; Mature: 47602

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEQEVMKEKAILVGCQLPHVSDERFSYSMEELAALTKTADGTVVSTVTQKRNRVDAATY
CCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCHHHHHH
IGKGKVDELAVLCEELSPDVLIFNDELSPSQLKALVTTLDVKIIDRTQLILDIFAKRART
CCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCC
REGKLQIELAQLQYALPRLSGQGINLSRQGGGIGTRGPGETKLETDRRHIRNRIHEINVQ
CCCCEEEEHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTDADSYEENLLFATLDPMTR
HHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHCCCCCHHCCEEEEECCHHHH
KMMLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHMIDSSHEDYEGHEET
HHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
VKRLLEELEADDIPVLTVYNKRDRKRPDFIPSSGRGHIMTSAKIDGDLPLFKQAVEDYLK
HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
KELLVPYDVRIPASEGRLLSRIKSETMTNSTVFDEDREAYEVEGYILPDQNILGELKKYM
HHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHCC
>Mature Secondary Structure
MNEQEVMKEKAILVGCQLPHVSDERFSYSMEELAALTKTADGTVVSTVTQKRNRVDAATY
CCHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCHHHHHH
IGKGKVDELAVLCEELSPDVLIFNDELSPSQLKALVTTLDVKIIDRTQLILDIFAKRART
CCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCC
REGKLQIELAQLQYALPRLSGQGINLSRQGGGIGTRGPGETKLETDRRHIRNRIHEINVQ
CCCCEEEEHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LSTVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTDADSYEENLLFATLDPMTR
HHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHCCCCCHHCCEEEEECCHHHH
KMMLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHMIDSSHEDYEGHEET
HHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
VKRLLEELEADDIPVLTVYNKRDRKRPDFIPSSGRGHIMTSAKIDGDLPLFKQAVEDYLK
HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
KELLVPYDVRIPASEGRLLSRIKSETMTNSTVFDEDREAYEVEGYILPDQNILGELKKYM
HHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]