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The map label for this gene is ylmE [H]

Identifier: 52785516

GI number: 52785516

Start: 1715379

End: 1716074

Strand: Direct

Name: ylmE [H]

Synonym: BLi01757

Alternate gene names: 52785516

Gene position: 1715379-1716074 (Clockwise)

Preceding gene: 52785515

Following gene: 52785517

Centisome position: 40.62

GC content: 47.84

Gene sequence:

>696_bases
GTGGATGTAAAAAGCAATTTACGACATATAAATGACAGGATCAACGAAGCGTGTATCAAAGCGGGCAGAACGCCCGACGA
AATATCCGTCATCGCTGTCACGAAATATGTTTCCCCGGAACGGGCGCAGGCAGCGCTGGATGCAGGAATCAGGCATTTGG
GTGAAAACCGTGATACCGGGCTGCTTCACAAGCTCGACGTTCTGAAAGACAGCGAACCGGTATGGCATTTTATCGGAACC
CTGCAGACGAGAAAGGTAAAAGCAATCATCGATCATGTCTCATATATCCATTCTTTAGACAGGCTTTCACTGGCCGATGA
AATTCAAAAGAGGGCAAAAAAACCGATTGACTGTTTTGTCCAGGTCAACACATCCCTTGAACCTTCAAAACACGGCATGG
CAAAAGAAGAAGTTCTTCCTTTTGTAAAAAAACTGTCTGGATACGAAAACATTCGGATCGCGGGATTAATGACGATGGCT
CCTTTTACGGATGATGAGAAGGCAATCAGAAGCTGTTTTCGCTTGCTGAGAGAGCTGCGCGACGAGGTGCGGGGCCTTGA
TCAATGGAACGCTCCGTGCAGCGAGCTTTCGATGGGTATGTCTAACGACTATGCGATCGCAGTCGAGGAAGGCGCGACAT
TCGTCAGAATCGGATCTTCCTTAGTCGGAAATGAAACTGGAGGTGGACAATCATGA

Upstream 100 bases:

>100_bases
ACGAGCTGCGAGCGTTCACTGTTTTTCTCCCATCGGAGAGACCGGGGAAAAACCGGACGGATGATGTCCTTCATCGGATT
AAAGGAGGTATAGCTTACAG

Downstream 100 bases:

>100_bases
GTTTGAAAAACAAATTTAAAAACTTTTTTTCCTTGGATGATGAGGAATACGAATACGAGTATATTGAAACAGACAGGGAG
GAAATCCCTGAAGAGCATGA

Product: YlmE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTGLLHKLDVLKDSEPVWHFIGT
LQTRKVKAIIDHVSYIHSLDRLSLADEIQKRAKKPIDCFVQVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMA
PFTDDEKAIRSCFRLLRELRDEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVGNETGGGQS

Sequences:

>Translated_231_residues
MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTGLLHKLDVLKDSEPVWHFIGT
LQTRKVKAIIDHVSYIHSLDRLSLADEIQKRAKKPIDCFVQVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMA
PFTDDEKAIRSCFRLLRELRDEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVGNETGGGQS
>Mature_231_residues
MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTGLLHKLDVLKDSEPVWHFIGT
LQTRKVKAIIDHVSYIHSLDRLSLADEIQKRAKKPIDCFVQVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMA
PFTDDEKAIRSCFRLLRELRDEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVGNETGGGQS

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=240, Percent_Identity=34.1666666666667, Blast_Score=104, Evalue=6e-23,
Organism=Escherichia coli, GI1789321, Length=228, Percent_Identity=32.0175438596491, Blast_Score=118, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17533025, Length=235, Percent_Identity=30.6382978723404, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=221, Percent_Identity=33.0316742081448, Blast_Score=87, Evalue=2e-18,
Organism=Drosophila melanogaster, GI45550861, Length=244, Percent_Identity=28.6885245901639, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25687; Mature: 25687

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTG
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
LLHKLDVLKDSEPVWHFIGTLQTRKVKAIIDHVSYIHSLDRLSLADEIQKRAKKPIDCFV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
QVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMAPFTDDEKAIRSCFRLLRELR
EECCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVGNETGGGQS
HHHCCCCCCCCCHHHHHCCCCCCEEEEEECCCEEEEECCHHHCCCCCCCCC
>Mature Secondary Structure
MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTG
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
LLHKLDVLKDSEPVWHFIGTLQTRKVKAIIDHVSYIHSLDRLSLADEIQKRAKKPIDCFV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
QVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMAPFTDDEKAIRSCFRLLRELR
EECCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
DEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVGNETGGGQS
HHHCCCCCCCCCHHHHHCCCCCCEEEEEECCCEEEEECCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]