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The map label for this gene is ylmD [H]

Identifier: 52785515

GI number: 52785515

Start: 1714508

End: 1715371

Strand: Direct

Name: ylmD [H]

Synonym: BLi01756

Alternate gene names: 52785515

Gene position: 1714508-1715371 (Clockwise)

Preceding gene: 52785514

Following gene: 52785516

Centisome position: 40.6

GC content: 51.16

Gene sequence:

>864_bases
ATGTTTGTCGAAAGGCTGATCACCATGAATACATATAACCCCTTTCGTCTTGATGCTCCGTCAATGCTTTTGATTGAGGA
ATGGAATCAGACGGCGGAAACCGGCGGAGCCGTCACAGCCGGATTTACGACAAAAAACGGCGGAGAAAGCGAACCGCCTT
TTCACTCATTGAATACAGGGCTGCACGTTCAGGATCATGAACAGCATGTCATCAATAACAGAAAAAAGGTTGCCGACATC
CTAAAAACAGATCTGCACGACTGGGTATTTGCTGATCAGACGCATGAAGACCGGATTCATAAAGTGACGGATGGCGATCG
CGCCAGCGGCGCTTTCCGATACGATACGGCGCTGAAGGCTACGGACGGACTTTATACAGACAGGCCAAACCTGTTTTTGG
CGCTTTGCTTTGCCGACTGCGTTCCCGTTTATTTTTACGATCCGGTCCGCTCGCTGGTCGGCATCGCTCACGCGGGCTGG
AAAGGCACCGCACTTGGGATCGCCGCCAGCATGGTTGACATGTGGATCAGGCGGGAAGGGTCGAATCCCGCAGACATCCG
TGCCGTGATCGGGCCTGCGATCGGTTCGTGCTGCTACACTGTCGACGATCATGTAATAGACAAAATCAGAAATCTTCCTC
TTCAGCAAGAAGACAAAGCCTTTTTGACGATAAAAGAAGGGGAGTACCGTCTCGAATTAAAAGAAGTGAACAGGCAGCTG
CTTGTACACGCCGGAATTCCAAACGGCCAGATCGAAGTGAGTTCCCTTTGTACGAGCTGCGAGCGTTCACTGTTTTTCTC
CCATCGGAGAGACCGGGGAAAAACCGGACGGATGATGTCCTTCATCGGATTAAAGGAGGTATAG

Upstream 100 bases:

>100_bases
TAAATGTTGCAAACAATACATTTCGTTTAGTTTTTTGAAACGAAACTAAACGAATGCATCAAGATGTGTTAAAATAGGAG
CGATATGATGAAAGACTACG

Downstream 100 bases:

>100_bases
CTTACAGGTGGATGTAAAAAGCAATTTACGACATATAAATGACAGGATCAACGAAGCGTGTATCAAAGCGGGCAGAACGC
CCGACGAAATATCCGTCATC

Product: YlmD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MFVERLITMNTYNPFRLDAPSMLLIEEWNQTAETGGAVTAGFTTKNGGESEPPFHSLNTGLHVQDHEQHVINNRKKVADI
LKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTALKATDGLYTDRPNLFLALCFADCVPVYFYDPVRSLVGIAHAGW
KGTALGIAASMVDMWIRREGSNPADIRAVIGPAIGSCCYTVDDHVIDKIRNLPLQQEDKAFLTIKEGEYRLELKEVNRQL
LVHAGIPNGQIEVSSLCTSCERSLFFSHRRDRGKTGRMMSFIGLKEV

Sequences:

>Translated_287_residues
MFVERLITMNTYNPFRLDAPSMLLIEEWNQTAETGGAVTAGFTTKNGGESEPPFHSLNTGLHVQDHEQHVINNRKKVADI
LKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTALKATDGLYTDRPNLFLALCFADCVPVYFYDPVRSLVGIAHAGW
KGTALGIAASMVDMWIRREGSNPADIRAVIGPAIGSCCYTVDDHVIDKIRNLPLQQEDKAFLTIKEGEYRLELKEVNRQL
LVHAGIPNGQIEVSSLCTSCERSLFFSHRRDRGKTGRMMSFIGLKEV
>Mature_287_residues
MFVERLITMNTYNPFRLDAPSMLLIEEWNQTAETGGAVTAGFTTKNGGESEPPFHSLNTGLHVQDHEQHVINNRKKVADI
LKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTALKATDGLYTDRPNLFLALCFADCVPVYFYDPVRSLVGIAHAGW
KGTALGIAASMVDMWIRREGSNPADIRAVIGPAIGSCCYTVDDHVIDKIRNLPLQQEDKAFLTIKEGEYRLELKEVNRQL
LVHAGIPNGQIEVSSLCTSCERSLFFSHRRDRGKTGRMMSFIGLKEV

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=169, Percent_Identity=35.5029585798817, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI190194372, Length=169, Percent_Identity=35.5029585798817, Blast_Score=110, Evalue=1e-24,
Organism=Escherichia coli, GI1788945, Length=266, Percent_Identity=33.0827067669173, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 32168; Mature: 32168

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVERLITMNTYNPFRLDAPSMLLIEEWNQTAETGGAVTAGFTTKNGGESEPPFHSLNTG
CCHHHEEEECCCCCEEECCCCEEEEECCCHHHHCCCEEEECEEECCCCCCCCCCHHCCCC
LHVQDHEQHVINNRKKVADILKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTALKA
CEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEECCHHHC
TDGLYTDRPNLFLALCFADCVPVYFYDPVRSLVGIAHAGWKGTALGIAASMVDMWIRREG
CCCCCCCCCCHHHEEHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
SNPADIRAVIGPAIGSCCYTVDDHVIDKIRNLPLQQEDKAFLTIKEGEYRLELKEVNRQL
CCCHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEHHHCCCEE
LVHAGIPNGQIEVSSLCTSCERSLFFSHRRDRGKTGRMMSFIGLKEV
EEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEHHCCCCCC
>Mature Secondary Structure
MFVERLITMNTYNPFRLDAPSMLLIEEWNQTAETGGAVTAGFTTKNGGESEPPFHSLNTG
CCHHHEEEECCCCCEEECCCCEEEEECCCHHHHCCCEEEECEEECCCCCCCCCCHHCCCC
LHVQDHEQHVINNRKKVADILKTDLHDWVFADQTHEDRIHKVTDGDRASGAFRYDTALKA
CEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEECCHHHC
TDGLYTDRPNLFLALCFADCVPVYFYDPVRSLVGIAHAGWKGTALGIAASMVDMWIRREG
CCCCCCCCCCHHHEEHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
SNPADIRAVIGPAIGSCCYTVDDHVIDKIRNLPLQQEDKAFLTIKEGEYRLELKEVNRQL
CCCHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEHHHCCCEE
LVHAGIPNGQIEVSSLCTSCERSLFFSHRRDRGKTGRMMSFIGLKEV
EEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCEEHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]