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The map label for this gene is intR [C]

Identifier: 52785338

GI number: 52785338

Start: 1541375

End: 1542520

Strand: Direct

Name: intR [C]

Synonym: BLi01574

Alternate gene names: 52785338

Gene position: 1541375-1542520 (Clockwise)

Preceding gene: 52785337

Following gene: 52785339

Centisome position: 36.5

GC content: 43.37

Gene sequence:

>1146_bases
ATGACAGTGATTAAGAAAGACGATAAAACCGGAAAATATTATTTTGTATATTCTGGCGGGGTTCACCCGATAACTGGTGC
TAGAATTCAAAAAAGAAGGCAAGGAATGTCGAGTCTACGAGAGGCGAAAGAGGTTTTAAAGCAGGTCATAATAGAGGTGG
ATAAGGAAAAAAATTCTCATAACCCTAATAAAAGCGTGTTTAGTACCTTCGCTGAAAAATGGTTTGAATCGAAAAAGGTT
AGACTTCGATCAAGTACAATCGTCAATTACCGCGAGCAGCTTGATTACAACATACTTCCATATCTAGGAACGTTTAAAAT
TAAAGACATCACTGAGGAAGTCTTGCAGCATTATATTAATCGACTTCACAATGAACGGAAACTTGCTCCGGCAACCATCC
GGACAGCTTTCGGTGTTGTCGCCGAAGTCTTAAAGAAAGCTTCCCGAAAAGGAGCGTTCGACCTCGCCATCCTTGACGAT
GTAAACCTTCCTCCCGAAAATCGCATTTCTAAAGTATGGAACGAGTCGAATGTACAAGCGTTTTTGGATGCTCGCAACCG
TATCGTGTCACTAACTCGTTACTTTATCGGAATGGTATTATCCGTTATTACAGGCATGCGAATGGGGGAGGTTCTCGGAT
TGCGGTGGTCCGATATAGACTTCGAAAAGGGTTATTTAACAATTCGACAAACTCTCGCTAAGATAGACGACGAAGGTAAT
TACGGATTAGTTCCCGAGGTCAAAACTGCGGCGGGCTTCAGGACCGTCCATTTACCGAAATTCTTTATCGAATACTTAAT
CGAACATAAGAAAATGGTCCAGCGCGAAAAAGAAATTCTCGGCGAGGACTACATCGACTATGATCTCGTAGTGTGTACGA
AGCACGGTAAGTGGGTACATCCGAATAACTATCGACGGGCATTTACTCGGTTAATTGCGCAGCTTGAGCTCCCGAAAATC
CCTCCGAAGAATTTGCGACATACTCACGCGACGTATTTAATCAGTATCGGAATCAGTCCGAAGATTGTTCAGGAGCGTTT
AGGCCACGCACATATCAAAACGACGCTCGGAACGTACAGTCATGTTTTGCCTTCGATGCAGGCGGAATTAGTCGGAAAAT
TGGACGATTTAGTCGCGAAAGTGTGA

Upstream 100 bases:

>100_bases
TTGCGTTGGAGGACGTGTGACTCCCTAAAAAGGGGTCATAGTGATATAATAGAGGACATCACAACTAGCATTAATCTTTC
GCTCAATTGGAGTGAGGATA

Downstream 100 bases:

>100_bases
CCGCAGTGTGACCGTTTTGTGTGACCGGATGTGAGAGCGTTGATATGACGGGATTTTAACAACGGATTCCATCACGAAGA
CTGCATGAACATCATCATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MTVIKKDDKTGKYYFVYSGGVHPITGARIQKRRQGMSSLREAKEVLKQVIIEVDKEKNSHNPNKSVFSTFAEKWFESKKV
RLRSSTIVNYREQLDYNILPYLGTFKIKDITEEVLQHYINRLHNERKLAPATIRTAFGVVAEVLKKASRKGAFDLAILDD
VNLPPENRISKVWNESNVQAFLDARNRIVSLTRYFIGMVLSVITGMRMGEVLGLRWSDIDFEKGYLTIRQTLAKIDDEGN
YGLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTKHGKWVHPNNYRRAFTRLIAQLELPKI
PPKNLRHTHATYLISIGISPKIVQERLGHAHIKTTLGTYSHVLPSMQAELVGKLDDLVAKV

Sequences:

>Translated_381_residues
MTVIKKDDKTGKYYFVYSGGVHPITGARIQKRRQGMSSLREAKEVLKQVIIEVDKEKNSHNPNKSVFSTFAEKWFESKKV
RLRSSTIVNYREQLDYNILPYLGTFKIKDITEEVLQHYINRLHNERKLAPATIRTAFGVVAEVLKKASRKGAFDLAILDD
VNLPPENRISKVWNESNVQAFLDARNRIVSLTRYFIGMVLSVITGMRMGEVLGLRWSDIDFEKGYLTIRQTLAKIDDEGN
YGLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTKHGKWVHPNNYRRAFTRLIAQLELPKI
PPKNLRHTHATYLISIGISPKIVQERLGHAHIKTTLGTYSHVLPSMQAELVGKLDDLVAKV
>Mature_380_residues
TVIKKDDKTGKYYFVYSGGVHPITGARIQKRRQGMSSLREAKEVLKQVIIEVDKEKNSHNPNKSVFSTFAEKWFESKKVR
LRSSTIVNYREQLDYNILPYLGTFKIKDITEEVLQHYINRLHNERKLAPATIRTAFGVVAEVLKKASRKGAFDLAILDDV
NLPPENRISKVWNESNVQAFLDARNRIVSLTRYFIGMVLSVITGMRMGEVLGLRWSDIDFEKGYLTIRQTLAKIDDEGNY
GLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTKHGKWVHPNNYRRAFTRLIAQLELPKIP
PKNLRHTHATYLISIGISPKIVQERLGHAHIKTTLGTYSHVLPSMQAELVGKLDDLVAKV

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=345, Percent_Identity=22.0289855072464, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43791; Mature: 43660

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVIKKDDKTGKYYFVYSGGVHPITGARIQKRRQGMSSLREAKEVLKQVIIEVDKEKNSH
CCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NPNKSVFSTFAEKWFESKKVRLRSSTIVNYREQLDYNILPYLGTFKIKDITEEVLQHYIN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHH
RLHNERKLAPATIRTAFGVVAEVLKKASRKGAFDLAILDDVNLPPENRISKVWNESNVQA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCHHH
FLDARNRIVSLTRYFIGMVLSVITGMRMGEVLGLRWSDIDFEKGYLTIRQTLAKIDDEGN
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEECCCCCCCHHHHHHHHHHHCCCCCC
YGLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTKHGKWVH
CCCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
PNNYRRAFTRLIAQLELPKIPPKNLRHTHATYLISIGISPKIVQERLGHAHIKTTLGTYS
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHH
HVLPSMQAELVGKLDDLVAKV
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVIKKDDKTGKYYFVYSGGVHPITGARIQKRRQGMSSLREAKEVLKQVIIEVDKEKNSH
CCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
NPNKSVFSTFAEKWFESKKVRLRSSTIVNYREQLDYNILPYLGTFKIKDITEEVLQHYIN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHH
RLHNERKLAPATIRTAFGVVAEVLKKASRKGAFDLAILDDVNLPPENRISKVWNESNVQA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCHHH
FLDARNRIVSLTRYFIGMVLSVITGMRMGEVLGLRWSDIDFEKGYLTIRQTLAKIDDEGN
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEECCCCCCCHHHHHHHHHHHCCCCCC
YGLVPEVKTAAGFRTVHLPKFFIEYLIEHKKMVQREKEILGEDYIDYDLVVCTKHGKWVH
CCCCCCCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
PNNYRRAFTRLIAQLELPKIPPKNLRHTHATYLISIGISPKIVQERLGHAHIKTTLGTYS
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCHHHHHHHHHHH
HVLPSMQAELVGKLDDLVAKV
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]