Click here to switch to the map view.

The map label for this gene is rsgA2 [H]

Identifier: 52784943

GI number: 52784943

Start: 1178735

End: 1179787

Strand: Direct

Name: rsgA2 [H]

Synonym: BLi01171

Alternate gene names: 52784943

Gene position: 1178735-1179787 (Clockwise)

Preceding gene: 52784942

Following gene: 52784944

Centisome position: 27.91

GC content: 51.66

Gene sequence:

>1053_bases
TTGAATTTATCAGCATTAGGCATCAAATATATCATGGAAGCTTTAAAGGATGAGGAAGGTCTGGTTTTGGGAAGGATCGC
CCTTGAGCATAAAAGGTTGTACCGGGTATGGACGGAAGAAGGTCAGTGGCTTGCCGAAATCTCCGGCAGGCTGCGGTTTG
AAGTGGAAAGCCGCGGAGACTACCCCGCTGTCGGCGATTGGGTGTATATGCGCCCACGCGGCGGCGAAAAGAAGGGAATC
ATCACGGAGGTCGTTCCCCGATTCAGCAAATTTTCGCGCAAAGCGGCGGGTGAGCCGGCGGAGGAACAGATCACCGCAGC
AAACGTCAATACGATCTTTCTCGTCAATGCGCTCGGTCTGGATTTTAATGTGAGAAGAATCGAACGCTACTTGCTGCTGG
CATGGGAAAGCGGAGCCAATCCCGTCATCGTCTTAAGCAAAGCGGACATTGCTGACCGGATTGAAGAAAAGGTGCGCCAG
GCGGAGTCCGTGGCATTCGGGGTGCCGATTCACGTCATCAGCGCTCATGAAGGCAGTGGGATGGATGAGCTGAAAGCGTA
TGTGAAACAAGGGGAAACCGTCGCCCTTTTAGGGTCGTCAGGCGTCGGAAAATCAACGATCATCAACTTTTTTCTGAAGG
AAGACAGGCAAGCCGTCCAATCCGTTCGTGAAGATGATGACAAAGGGCGGCATACGACGACGCACAGGGAGATGTTTATG
CTGCCTGAAGGCGGGCTTTTAATCGATACGCCGGGGATGCGGGCCTTAGAGCTTTGGGAATCGGAAGAAGGATTCAAGCA
GAGTTTCAGCGATATTGACCAGCTTGCACAAAACTGCCGATTTTCAGACTGCCTGCATCAAACAGAACCCGGCTGCTCCG
TGCGGGAGGCGCTGGCTGACGGGAGGCTGGATGCCGGCCGGTTCCAAAGCTACCTGAAATTAAAAAAAGAGCTCGAATAC
CTCGAAAGAAAAACGGATAAACGGGCGATGCAGCAGGAAAAAAAGCGGTGGAAACAGATAACGAAAAGCATGAAAAAGAA
CAAAAACAAATAA

Upstream 100 bases:

>100_bases
TGGGCTGTGAACCGGCTCATGGAGTGTTTATATGTTGAAAGAGCCGTGTATTTGCGGCTCTTTTTTTAATCAATCATCAG
ATCTTTAGGAGGAAACCGAA

Downstream 100 bases:

>100_bases
ATGAAAAAGGCGCTGATAAATGGCTTCAGCGTCTTTTTGCTGCGGAAATGACAGCGTTCACATTGTTTTGTTTAATGGAC
CGGTTCATGATAAGATAAGA

Product: ribosome-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MNLSALGIKYIMEALKDEEGLVLGRIALEHKRLYRVWTEEGQWLAEISGRLRFEVESRGDYPAVGDWVYMRPRGGEKKGI
ITEVVPRFSKFSRKAAGEPAEEQITAANVNTIFLVNALGLDFNVRRIERYLLLAWESGANPVIVLSKADIADRIEEKVRQ
AESVAFGVPIHVISAHEGSGMDELKAYVKQGETVALLGSSGVGKSTIINFFLKEDRQAVQSVREDDDKGRHTTTHREMFM
LPEGGLLIDTPGMRALELWESEEGFKQSFSDIDQLAQNCRFSDCLHQTEPGCSVREALADGRLDAGRFQSYLKLKKELEY
LERKTDKRAMQQEKKRWKQITKSMKKNKNK

Sequences:

>Translated_350_residues
MNLSALGIKYIMEALKDEEGLVLGRIALEHKRLYRVWTEEGQWLAEISGRLRFEVESRGDYPAVGDWVYMRPRGGEKKGI
ITEVVPRFSKFSRKAAGEPAEEQITAANVNTIFLVNALGLDFNVRRIERYLLLAWESGANPVIVLSKADIADRIEEKVRQ
AESVAFGVPIHVISAHEGSGMDELKAYVKQGETVALLGSSGVGKSTIINFFLKEDRQAVQSVREDDDKGRHTTTHREMFM
LPEGGLLIDTPGMRALELWESEEGFKQSFSDIDQLAQNCRFSDCLHQTEPGCSVREALADGRLDAGRFQSYLKLKKELEY
LERKTDKRAMQQEKKRWKQITKSMKKNKNK
>Mature_350_residues
MNLSALGIKYIMEALKDEEGLVLGRIALEHKRLYRVWTEEGQWLAEISGRLRFEVESRGDYPAVGDWVYMRPRGGEKKGI
ITEVVPRFSKFSRKAAGEPAEEQITAANVNTIFLVNALGLDFNVRRIERYLLLAWESGANPVIVLSKADIADRIEEKVRQ
AESVAFGVPIHVISAHEGSGMDELKAYVKQGETVALLGSSGVGKSTIINFFLKEDRQAVQSVREDDDKGRHTTTHREMFM
LPEGGLLIDTPGMRALELWESEEGFKQSFSDIDQLAQNCRFSDCLHQTEPGCSVREALADGRLDAGRFQSYLKLKKELEY
LERKTDKRAMQQEKKRWKQITKSMKKNKNK

Specific function: May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover [H]

COG id: COG1162

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 engC GTPase domain [H]

Homologues:

Organism=Escherichia coli, GI87082381, Length=264, Percent_Identity=30.3030303030303, Blast_Score=128, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010914
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004881 [H]

Pfam domain/function: PF03193 DUF258 [H]

EC number: NA

Molecular weight: Translated: 39727; Mature: 39727

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS50936 ENGC_GTPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSALGIKYIMEALKDEEGLVLGRIALEHKRLYRVWTEEGQWLAEISGRLRFEVESRGD
CCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCC
YPAVGDWVYMRPRGGEKKGIITEVVPRFSKFSRKAAGEPAEEQITAANVNTIFLVNALGL
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCC
DFNVRRIERYLLLAWESGANPVIVLSKADIADRIEEKVRQAESVAFGVPIHVISAHEGSG
CCHHHHHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHEECCCEEEEECCCCCC
MDELKAYVKQGETVALLGSSGVGKSTIINFFLKEDRQAVQSVREDDDKGRHTTTHREMFM
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
LPEGGLLIDTPGMRALELWESEEGFKQSFSDIDQLAQNCRFSDCLHQTEPGCSVREALAD
ECCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHC
GRLDAGRFQSYLKLKKELEYLERKTDKRAMQQEKKRWKQITKSMKKNKNK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLSALGIKYIMEALKDEEGLVLGRIALEHKRLYRVWTEEGQWLAEISGRLRFEVESRGD
CCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCC
YPAVGDWVYMRPRGGEKKGIITEVVPRFSKFSRKAAGEPAEEQITAANVNTIFLVNALGL
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCC
DFNVRRIERYLLLAWESGANPVIVLSKADIADRIEEKVRQAESVAFGVPIHVISAHEGSG
CCHHHHHHHHHEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHEECCCEEEEECCCCCC
MDELKAYVKQGETVALLGSSGVGKSTIINFFLKEDRQAVQSVREDDDKGRHTTTHREMFM
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
LPEGGLLIDTPGMRALELWESEEGFKQSFSDIDQLAQNCRFSDCLHQTEPGCSVREALAD
ECCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHC
GRLDAGRFQSYLKLKKELEYLERKTDKRAMQQEKKRWKQITKSMKKNKNK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GTP [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]