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The map label for this gene is ydcN [H]

Identifier: 52784877

GI number: 52784877

Start: 1105996

End: 1106547

Strand: Direct

Name: ydcN [H]

Synonym: BLi01105

Alternate gene names: 52784877

Gene position: 1105996-1106547 (Clockwise)

Preceding gene: 52784875

Following gene: 52784878

Centisome position: 26.19

GC content: 47.64

Gene sequence:

>552_bases
ATGAATTCGATTGAAAAACAAGTGGCAGAAAACATTAAGAGGCTGCGAAAAATCCGCAATTACAGCCTTGATCAATTGTC
ATCGATGACCGGCGTCAGCAAAGGCATGCTCGCGCAAATTGAAAAAGGCTCTTCAAGTCCGACAATCACAACCTTGTGGA
AGATCGCAAACGGGCTGCAAGTATCATTTACTTCTTTGGCAGAAAGGCCTGCCGGGGAGCCGACGGTCGTCAGAAAGCAC
GAGAAAACGCCTGTTATGGCCGGAGAAGAAAAATACGCGGCATTTCCGCATTTTCCGTTCGACCAGAAAAAGAAGTTTGA
AATCTTTTATATTGAACTTGCGCCCGGCTGTGTGCACGAATCAGAGCCTCACCACGGAGGGATTGAAGAGTACGTGCTCG
TCTCTAAAGGCGCGCTTGCGGTGACGGCGGGTGATTACACCTGCGACTTGAACGAGGGTGATGCAATGCATTTCACCGCA
AACACCGTTCATACGTACAAAAACAACACGGAACAAACGGCATCATGCTATACACTCATTTATTATCCGTAA

Upstream 100 bases:

>100_bases
CTATCTATTTTCTCCCTTTAAAGCCTTTTCATCCTGAGAAATTATGCTATAATGTTCAATAAATTATACGAATGTTTAAT
TTATTATAAGGGGGCGGAAG

Downstream 100 bases:

>100_bases
AGAGGTGTCAAGATGGAAAAGCAGGATTCACTCAACTTTCTAGACGGGCTTCGTTCAGGGGTTTCCCTTGCCGTCGGCTA
CATCCCGGTCGCCTTGACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVSFTSLAERPAGEPTVVRKH
EKTPVMAGEEKYAAFPHFPFDQKKKFEIFYIELAPGCVHESEPHHGGIEEYVLVSKGALAVTAGDYTCDLNEGDAMHFTA
NTVHTYKNNTEQTASCYTLIYYP

Sequences:

>Translated_183_residues
MNSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVSFTSLAERPAGEPTVVRKH
EKTPVMAGEEKYAAFPHFPFDQKKKFEIFYIELAPGCVHESEPHHGGIEEYVLVSKGALAVTAGDYTCDLNEGDAMHFTA
NTVHTYKNNTEQTASCYTLIYYP
>Mature_183_residues
MNSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVSFTSLAERPAGEPTVVRKH
EKTPVMAGEEKYAAFPHFPFDQKKKFEIFYIELAPGCVHESEPHHGGIEEYVLVSKGALAVTAGDYTCDLNEGDAMHFTA
NTVHTYKNNTEQTASCYTLIYYP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=184, Percent_Identity=38.0434782608696, Blast_Score=134, Evalue=5e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20380; Mature: 20380

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQ
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHECCCCCCCHHEEHHHHHCCCE
VSFTSLAERPAGEPTVVRKHEKTPVMAGEEKYAAFPHFPFDQKKKFEIFYIELAPGCVHE
EEHHHHHCCCCCCCCEEEECCCCCCEECCCCCEECCCCCCCCCCCEEEEEEEECCCCCCC
SEPHHGGIEEYVLVSKGALAVTAGDYTCDLNEGDAMHFTANTVHTYKNNTEQTASCYTLI
CCCCCCCCCEEEEEECCEEEEEECCEEEECCCCCEEEEEECEEEECCCCCCCCCEEEEEE
YYP
EEC
>Mature Secondary Structure
MNSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQ
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHECCCCCCCHHEEHHHHHCCCE
VSFTSLAERPAGEPTVVRKHEKTPVMAGEEKYAAFPHFPFDQKKKFEIFYIELAPGCVHE
EEHHHHHCCCCCCCCEEEECCCCCCEECCCCCEECCCCCCCCCCCEEEEEEEECCCCCCC
SEPHHGGIEEYVLVSKGALAVTAGDYTCDLNEGDAMHFTANTVHTYKNNTEQTASCYTLI
CCCCCCCCCEEEEEECCEEEEEECCEEEECCCCCEEEEEECEEEECCCCCCCCCEEEEEE
YYP
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]