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The map label for this gene is sigM [H]

Identifier: 52784792

GI number: 52784792

Start: 1023304

End: 1023795

Strand: Reverse

Name: sigM [H]

Synonym: BLi01020

Alternate gene names: 52784792

Gene position: 1023795-1023304 (Counterclockwise)

Preceding gene: 52784793

Following gene: 52784791

Centisome position: 24.25

GC content: 41.46

Gene sequence:

>492_bases
GTGACTATCGACGAAATTTACCAAATGTATATGAATGATGTTTACAGGTTCCTGCTCTCCATGACGAAAGATAAACATCT
AGCAGAGGATTTGCTTCAGGAAACCTTTATGAGAGCTTACATACACATCCATTCTTACGACCACAGCAAAGTGAAGCCAT
GGCTTTTTCAAGTGGCACGCAATGCGTTTATCGACTATGTCAGAAAGCATAAAAAGGAAGTGACGATTTCTGACGACATG
ATCGGAAACCTGTTTCAAAACGCGGTGCAAAGCCCTGCTCACCAGGTCGAAATCAAGGAAGTGTTAACCTTATATATGAA
CCAGCTCCCCGATAACTACCGGGAAGCGCTTACGCTGTACTATTTAAAAGAATTGAACTACAAGGAAGCGTCAAGCTTGA
TGAATATCTCAGAGGCTAATTTTAAAAGTGTTTTATTTCGTGCCAGACAGCGGCTGAAAGCACTTTACAACAGAGGTGTT
AACGATGAATGA

Upstream 100 bases:

>100_bases
TTTTAAAGGTAAGAAATTGGAGGAAAAATGAGCCGTGGGCATATTTAGTGCAACTTCAAACCTTTCTTATGCGTTTATAA
CATAGAGGGGAGAAAAGGCA

Downstream 100 bases:

>100_bases
AGATTTTAAAAAACGTTGGGAAAAATATAAAAACGGCGAACTTTCCGAATCGGAAATGCTCCGGGTCGAAGAAGAGCTTG
AACAGCTTGAAGAATACCAG

Product: RNA polymerase sigma factor SigM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDM
IGNLFQNAVQSPAHQVEIKEVLTLYMNQLPDNYREALTLYYLKELNYKEASSLMNISEANFKSVLFRARQRLKALYNRGV
NDE

Sequences:

>Translated_163_residues
MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDM
IGNLFQNAVQSPAHQVEIKEVLTLYMNQLPDNYREALTLYYLKELNYKEASSLMNISEANFKSVLFRARQRLKALYNRGV
NDE
>Mature_162_residues
TIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVARNAFIDYVRKHKKEVTISDDMI
GNLFQNAVQSPAHQVEIKEVLTLYMNQLPDNYREALTLYYLKELNYKEASSLMNISEANFKSVLFRARQRLKALYNRGVN
DE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19485; Mature: 19353

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVAR
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
NAFIDYVRKHKKEVTISDDMIGNLFQNAVQSPAHQVEIKEVLTLYMNQLPDNYREALTLY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YLKELNYKEASSLMNISEANFKSVLFRARQRLKALYNRGVNDE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TIDEIYQMYMNDVYRFLLSMTKDKHLAEDLLQETFMRAYIHIHSYDHSKVKPWLFQVAR
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
NAFIDYVRKHKKEVTISDDMIGNLFQNAVQSPAHQVEIKEVLTLYMNQLPDNYREALTLY
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
YLKELNYKEASSLMNISEANFKSVLFRARQRLKALYNRGVNDE
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]