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The map label for this gene is sigV [H]

Identifier: 52784408

GI number: 52784408

Start: 592712

End: 593209

Strand: Direct

Name: sigV [H]

Synonym: BLi00595

Alternate gene names: 52784408

Gene position: 592712-593209 (Clockwise)

Preceding gene: 52784407

Following gene: 52784409

Centisome position: 14.04

GC content: 43.78

Gene sequence:

>498_bases
ATGAAGAAACAAGCAGCCAGAGCGTCTCTTGTCGCTTGCATAACAGACCGGAAAGAAGACTTTTACCGGCTGGCATACAG
CTATGTGAAAAATCAAGAAGACGCCTTAGATATTGTCCAGGAATCAATCAAAAAAGCGCTCGATTCCGTCGATTCCGTTC
GCAATCCGGATACGATCAAAAGCTGGTTTTATAAAATTTTGGTGCGGACGGCAATCGATTTTTTGCGCAAACAGAAAAAA
CTAAAGGTTATGGATGATCAAACGATCGAGTTTTTAAGCCAGGGCAAGGAAGATACCTACCGGGATACAGATCTCCATGA
GGCGCTTGATGAGTTGCCGCAACCCTACCATACCATTATTGTTCTGCGGTTTTTCGAGGATCTCAAACTGGAAGAGATAG
CGGAAATCACAGGCGAAAACTTGAATACGATCAAAACGCGCCTTTACAGAGGATTGAAGCTTATGCGCATCCAATTGACG
AAGGAGGATCTTTCTTAA

Upstream 100 bases:

>100_bases
AAAAAACACGTCTTTCCGCAAACTATTTTTCGCACTCCCGCGTCTATCCTAATGTAACAGCCGTATATACGTATATTCGA
AAAAGGAGTTCTTTATTGCA

Downstream 100 bases:

>100_bases
TGGATAAGAAATTGGAACAGCTGAGAAAAGCATATCAAAACGTCCCCATTCCGAAGGAGCTGGATCAGGTTGTCGAGACT
GCGCTTCAGCATAAACCGAA

Product: SigV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKKQAARASLVACITDRKEDFYRLAYSYVKNQEDALDIVQESIKKALDSVDSVRNPDTIKSWFYKILVRTAIDFLRKQKK
LKVMDDQTIEFLSQGKEDTYRDTDLHEALDELPQPYHTIIVLRFFEDLKLEEIAEITGENLNTIKTRLYRGLKLMRIQLT
KEDLS

Sequences:

>Translated_165_residues
MKKQAARASLVACITDRKEDFYRLAYSYVKNQEDALDIVQESIKKALDSVDSVRNPDTIKSWFYKILVRTAIDFLRKQKK
LKVMDDQTIEFLSQGKEDTYRDTDLHEALDELPQPYHTIIVLRFFEDLKLEEIAEITGENLNTIKTRLYRGLKLMRIQLT
KEDLS
>Mature_165_residues
MKKQAARASLVACITDRKEDFYRLAYSYVKNQEDALDIVQESIKKALDSVDSVRNPDTIKSWFYKILVRTAIDFLRKQKK
LKVMDDQTIEFLSQGKEDTYRDTDLHEALDELPQPYHTIIVLRFFEDLKLEEIAEITGENLNTIKTRLYRGLKLMRIQLT
KEDLS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19409; Mature: 19409

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQAARASLVACITDRKEDFYRLAYSYVKNQEDALDIVQESIKKALDSVDSVRNPDTIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SWFYKILVRTAIDFLRKQKKLKVMDDQTIEFLSQGKEDTYRDTDLHEALDELPQPYHTII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHH
VLRFFEDLKLEEIAEITGENLNTIKTRLYRGLKLMRIQLTKEDLS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKQAARASLVACITDRKEDFYRLAYSYVKNQEDALDIVQESIKKALDSVDSVRNPDTIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SWFYKILVRTAIDFLRKQKKLKVMDDQTIEFLSQGKEDTYRDTDLHEALDELPQPYHTII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHH
VLRFFEDLKLEEIAEITGENLNTIKTRLYRGLKLMRIQLTKEDLS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]