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The map label for this gene is yybA [H]

Identifier: 52784394

GI number: 52784394

Start: 580124

End: 580576

Strand: Direct

Name: yybA [H]

Synonym: BLi00581

Alternate gene names: 52784394

Gene position: 580124-580576 (Clockwise)

Preceding gene: 52784391

Following gene: 52784395

Centisome position: 13.74

GC content: 38.19

Gene sequence:

>453_bases
ATGAAGGATATTCTGCGTGAAATTGGAATGATTGCCCGAGCATTGGATTCTATAAGCAATATCGAATTTAAAGAACATGA
CCTGACAAAAGGGCAATATTTGTACCTTGTCCGAATATGCGAAAACCCGGGAATCATTCAGGAGAAGCTGGCTGAGATGA
TTAAAGTAGACAGGACCACCGCAGCCCGTGCAATAAAAAAACTTGAAATGAAGGGCTTTATTGAACGGAGAGATGATGAA
CATAACAAAAAAATAAAAAAACTTTTTCCGACGGAAAAGGGAAATGAGGTATTTCCTTTTATAAAAAGAGAAAATGACCA
TTCGAATCGTGTGGCATTAGAGGGATTTTCCGAGGGGGAAGCGGAGATCATCTTCAATCTTCTTCAAAGAGTAAGAAAAA
ATGTAGAAAAGGACTGGGAATTCGTGAAAAAGGGGAACAAGAGAAATTATTGA

Upstream 100 bases:

>100_bases
CCTCTTTTTGTTTTTTATTGCAAATGCAACAATATTCCGGTATATTTAATGTACGCTAATTATATTGCATTTGCAACAAA
AAGCTCGAAAGGGGTTTATG

Downstream 100 bases:

>100_bases
CACGTAAAGGAGCGGCAGATTGAAATGACAGTAAATATAAAAAGGTGTACCCTTGAAGACTTACACAAGCTTCAGGAAAT
TGGTTATGAAACATTTAATG

Product: YybA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKDILREIGMIARALDSISNIEFKEHDLTKGQYLYLVRICENPGIIQEKLAEMIKVDRTTAARAIKKLEMKGFIERRDDE
HNKKIKKLFPTEKGNEVFPFIKRENDHSNRVALEGFSEGEAEIIFNLLQRVRKNVEKDWEFVKKGNKRNY

Sequences:

>Translated_150_residues
MKDILREIGMIARALDSISNIEFKEHDLTKGQYLYLVRICENPGIIQEKLAEMIKVDRTTAARAIKKLEMKGFIERRDDE
HNKKIKKLFPTEKGNEVFPFIKRENDHSNRVALEGFSEGEAEIIFNLLQRVRKNVEKDWEFVKKGNKRNY
>Mature_150_residues
MKDILREIGMIARALDSISNIEFKEHDLTKGQYLYLVRICENPGIIQEKLAEMIKVDRTTAARAIKKLEMKGFIERRDDE
HNKKIKKLFPTEKGNEVFPFIKRENDHSNRVALEGFSEGEAEIIFNLLQRVRKNVEKDWEFVKKGNKRNY

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17696; Mature: 17696

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDILREIGMIARALDSISNIEFKEHDLTKGQYLYLVRICENPGIIQEKLAEMIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
AARAIKKLEMKGFIERRDDEHNKKIKKLFPTEKGNEVFPFIKRENDHSNRVALEGFSEGE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCCCH
AEIIFNLLQRVRKNVEKDWEFVKKGNKRNY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKDILREIGMIARALDSISNIEFKEHDLTKGQYLYLVRICENPGIIQEKLAEMIKVDRTT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
AARAIKKLEMKGFIERRDDEHNKKIKKLFPTEKGNEVFPFIKRENDHSNRVALEGFSEGE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEECCCCCCH
AEIIFNLLQRVRKNVEKDWEFVKKGNKRNY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]