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The map label for this gene is cspC [H]

Identifier: 52784391

GI number: 52784391

Start: 577595

End: 577798

Strand: Direct

Name: cspC [H]

Synonym: BLi00578

Alternate gene names: 52784391

Gene position: 577595-577798 (Clockwise)

Preceding gene: 52784390

Following gene: 52784394

Centisome position: 13.68

GC content: 39.22

Gene sequence:

>204_bases
ATGGAACAAGGTACAGTTAAATGGTTTAATGCAGAAAAAGGTTTTGGATTTATCGAACGTGAAAATGGAGACGATGTATT
CGTACACTTTTCTGCAATCCAAAGCGACGGATTCAAATCATTAGACGAAGGTCAAAAAGTAACATTTGACGTTGAGCAAG
GTCCTCGCGGAGCTCAAGCTGCTAACGTTCAAAAAACTGCTTAA

Upstream 100 bases:

>100_bases
TCGGTGTAAAGGATAGTATGAATATTGACTTTTCGTCTTGATGATACTTTGGGCAAGGATAGTAATACAATGTGCGGTAA
CGCACTAGGAGGCAACAAAA

Downstream 100 bases:

>100_bases
TTTTCAATCGTTTATACAAACAGGCTCTCTATGTAGAGCCTGTTTTTTTATGTTCTCTGTATAATGCTTAATAAGAAAAC
CTACTCAACGTTCGAGTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGPRGAQAANVQKTA

Sequences:

>Translated_67_residues
MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGPRGAQAANVQKTA
>Mature_67_residues
MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGPRGAQAANVQKTA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=65, Percent_Identity=49.2307692307692, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI224586884, Length=65, Percent_Identity=49.2307692307692, Blast_Score=62, Evalue=1e-10,
Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=68.8524590163934, Blast_Score=87, Evalue=1e-19,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=64.0625, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=65.5737704918033, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=62.9032258064516, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=57.8125, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787834, Length=61, Percent_Identity=62.2950819672131, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=59.6774193548387, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7396; Mature: 7396

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGPRGAQA
CCCCCEEEEECCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
ANVQKTA
CCEECCC
>Mature Secondary Structure
MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQSDGFKSLDEGQKVTFDVEQGPRGAQA
CCCCCEEEEECCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
ANVQKTA
CCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]