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The map label for this gene is ycsF [C]

Identifier: 52784318

GI number: 52784318

Start: 504522

End: 505283

Strand: Direct

Name: ycsF [C]

Synonym: BLi00498

Alternate gene names: 52784318

Gene position: 504522-505283 (Clockwise)

Preceding gene: 52784317

Following gene: 52784319

Centisome position: 11.95

GC content: 51.57

Gene sequence:

>762_bases
ATGAATCAAGTTGATTTAAACTGCGATCTTGGAGAAAGCTTCGGCGCTTATAAAATCGGGCTGGATGAGGAGATTCTCGA
GTTTGTTACATCAGCCAACATCGCTTGCGGATTTCATGCGGGAGACCCTGGCGTCATGCGCAAAACCGTCAAAATGGCGG
CGGAAAAAGGCGTGAAAATCGGCGCGCATCCGGGACTTCCCGATTTAGCGGGATTCGGGCGCCGCAATATGGCGATCACG
CCTGAAGAAGCATACGATCTTGTCGTGTATCAAATCGGTGCGCTTTCAGGATTTCTAAAGGCTGAAGGCGTGACCATGCA
GCATGTGAAACCCCATGGCGCACTATATAATATGGCCGCGCAAAGCCGGGAACTGTCGGATGCGATCGCGCGCGCAGTTT
ATCAAACAGACCCGGAACTGATTTTATTCGGTTTGGCGGGAAGCGAACTTGTGCTTGCCGGTGAAAGAGCCGGTTTAAAA
ACGGCTCACGAAGTTTTCGCCGACCGTACATATCAAGAAGACGGAACGCTGACTTCCCGCCGCCAGAATGATGCGCTGAT
TCAAGATGACGATGAAGCCGTCGGCCAGGTGATCCGCATGGTGAAAGAAGGCAAGGTCCGCAGCCTGCAGGGAACGGATG
TCAGCCTTAAAGCAGATACGGTGTGCATTCACGGTGATGGTGCACACGCGCTTCATTTTGCGAAAAAAATCCGCCGCGAA
CTCAGAGCAGCAGATATTAAAGTACAAGCTTTTTCTACATGA

Upstream 100 bases:

>100_bases
TCAAGTTTGATTATTCGGAATTAATGTTCCGAAAATCGGAACAAAACGAGGGATATACTAAAATTCGACCGAATGTGCAT
CAATATATAGGGGGGATTTG

Downstream 100 bases:

>100_bases
TGTTGACAAAAGGAGGAATACCATTTGAAACAAAATAAAAAAACAAAAGCGCCGGCAGGCAACTGGACGTTGCTTTTGGG
CGCCGCTTTTTTAATGGCCA

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNQVDLNCDLGESFGAYKIGLDEEILEFVTSANIACGFHAGDPGVMRKTVKMAAEKGVKIGAHPGLPDLAGFGRRNMAIT
PEEAYDLVVYQIGALSGFLKAEGVTMQHVKPHGALYNMAAQSRELSDAIARAVYQTDPELILFGLAGSELVLAGERAGLK
TAHEVFADRTYQEDGTLTSRRQNDALIQDDDEAVGQVIRMVKEGKVRSLQGTDVSLKADTVCIHGDGAHALHFAKKIRRE
LRAADIKVQAFST

Sequences:

>Translated_253_residues
MNQVDLNCDLGESFGAYKIGLDEEILEFVTSANIACGFHAGDPGVMRKTVKMAAEKGVKIGAHPGLPDLAGFGRRNMAIT
PEEAYDLVVYQIGALSGFLKAEGVTMQHVKPHGALYNMAAQSRELSDAIARAVYQTDPELILFGLAGSELVLAGERAGLK
TAHEVFADRTYQEDGTLTSRRQNDALIQDDDEAVGQVIRMVKEGKVRSLQGTDVSLKADTVCIHGDGAHALHFAKKIRRE
LRAADIKVQAFST
>Mature_253_residues
MNQVDLNCDLGESFGAYKIGLDEEILEFVTSANIACGFHAGDPGVMRKTVKMAAEKGVKIGAHPGLPDLAGFGRRNMAIT
PEEAYDLVVYQIGALSGFLKAEGVTMQHVKPHGALYNMAAQSRELSDAIARAVYQTDPELILFGLAGSELVLAGERAGLK
TAHEVFADRTYQEDGTLTSRRQNDALIQDDDEAVGQVIRMVKEGKVRSLQGTDVSLKADTVCIHGDGAHALHFAKKIRRE
LRAADIKVQAFST

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=248, Percent_Identity=52.0161290322581, Blast_Score=262, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y498_BACLD (Q65NB0)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_077734.1
- RefSeq:   YP_090147.1
- ProteinModelPortal:   Q65NB0
- SMR:   Q65NB0
- STRING:   Q65NB0
- EnsemblBacteria:   EBBACT00000056984
- EnsemblBacteria:   EBBACT00000062039
- GeneID:   3030127
- GeneID:   3099682
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00498
- KEGG:   bli:BL02806
- NMPDR:   fig|279010.5.peg.585
- eggNOG:   COG1540
- GeneTree:   EBGT00050000001139
- HOGENOM:   HBG482818
- OMA:   QTICLHG
- ProtClustDB:   PRK05406
- BioCyc:   BLIC279010-1:BLI00498-MONOMER
- BioCyc:   BLIC279010:BL02806-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 27313; Mature: 27313

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQVDLNCDLGESFGAYKIGLDEEILEFVTSANIACGFHAGDPGVMRKTVKMAAEKGVKI
CCEEECCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEE
GAHPGLPDLAGFGRRNMAITPEEAYDLVVYQIGALSGFLKAEGVTMQHVKPHGALYNMAA
CCCCCCCHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH
QSRELSDAIARAVYQTDPELILFGLAGSELVLAGERAGLKTAHEVFADRTYQEDGTLTSR
HHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
RQNDALIQDDDEAVGQVIRMVKEGKVRSLQGTDVSLKADTVCIHGDGAHALHFAKKIRRE
CCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECEEEEECCCHHHHHHHHHHHHH
LRAADIKVQAFST
HHHHCEEEEEECC
>Mature Secondary Structure
MNQVDLNCDLGESFGAYKIGLDEEILEFVTSANIACGFHAGDPGVMRKTVKMAAEKGVKI
CCEEECCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEE
GAHPGLPDLAGFGRRNMAITPEEAYDLVVYQIGALSGFLKAEGVTMQHVKPHGALYNMAA
CCCCCCCHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHH
QSRELSDAIARAVYQTDPELILFGLAGSELVLAGERAGLKTAHEVFADRTYQEDGTLTSR
HHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
RQNDALIQDDDEAVGQVIRMVKEGKVRSLQGTDVSLKADTVCIHGDGAHALHFAKKIRRE
CCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECEEEEECCCHHHHHHHHHHHHH
LRAADIKVQAFST
HHHHCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA